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Welcome to the leADS wiki!

Documentation

You will find all relevant documentation for the current release below and in the sidebar to the right.

• Introduction

  • About- What is leADS?
  • Citation- How should I cite leADS?
  • Contact- Who should I contact in case of issues?

• Installation

  • Installing leADS- How do I install leADS?
  • Installing dependencies- What sort of computational resources and package dependencies are required to run leADS?

• Required files

  • Downloading files- What files are required to run leADS?

• Quick start

  • Tutorial to predicting pathways- How do I run leADS on different examples or use cases?

• Evaluation

  • Performance evaluation on Golden data- How do I check my model's performance on organismal data?
  • Performance evaluation on CAMI data- How do I check my model's performance on multi-organismal data?

• Advanced usage

  • Preprocessing- How can I generate specific files of my choice?
  • Training leADS- How can I train leADS to my specifications?

• Glossary- Concept Definitions.

Future work

We will be adding more instructions on how to incorporate groups into the leADS framework, where a group is comprised of correlated pathways (see reMap). Stay tuned!

Don't see what you're looking for? Create an issue using the GitHub issue tracker.