Option for vg call to select reference paths by sample name #4031
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…not used in presence of multiple samples
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Changelog Entry
To be copied to the draft changelog by merger:
-Soption added tovg callto select reference paths by sample name. This is more convenient as it allows, ex-S GRCh38to be used in place of-p GRCh38#0#chr1 -p GRCh38#0#chr2 ... Such selection is necessary when the graph has more than one reference sample andvg callwill now refuse to handle graphs with multiple reference samples unless paths are selected with-Sor-p.Description
This is critical for calling on the v1.1 HPRC graphs, which contain both GRCh38 and CHM13 as reference samples. Whereas running
callwithout any path selection worked fine on the v1.0 graphs (which had a single reference sample), it makes a big mess on the newer graphs as it calls on both references at once...