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21 Open 58 Closed
21 Open 58 Closed
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Issues list

Add GRIDSS variant calling
#178 opened Sep 19, 2024 by Faizal-Eeman
@Faizal-Eeman
Add GRIDSS assembly
#177 opened Sep 19, 2024 by Faizal-Eeman
@Faizal-Eeman
Add GRIDSS preprocessing
#176 opened Sep 19, 2024 by Faizal-Eeman
1
@Faizal-Eeman
Update Delly v1.2.8
#174 opened Sep 16, 2024 by Faizal-Eeman
@Faizal-Eeman
Document parameter recommendations
#172 opened Sep 5, 2024 by Faizal-Eeman
Improve algorithm documentation
#171 opened Sep 5, 2024 by Faizal-Eeman
Use store_object_as_json to store parameters standardization
#170 opened Aug 12, 2024 by nwiltsie
Cue addition
#169 opened Jul 22, 2024 by yashpatel6
@Faizal-Eeman @yashpatel6
Use methods.setup_process_afterscript() for process logs
#166 opened Jun 17, 2024 by nwiltsie
StructuralVariantAnnotation
#152 opened Apr 24, 2024 by Faizal-Eeman
Re-enable testing workflow after breaking changes
#149 opened Apr 5, 2024 by nwiltsie
@nwiltsie
DELLY Somatic CNV calling
#144 opened Mar 15, 2024 by Faizal-Eeman
1
output FILTER==PASS variants from Manta output
#138 opened Feb 26, 2024 by Faizal-Eeman
@Faizal-Eeman
Add STIX Support
#101 opened May 22, 2023 by WuSelina
Binary compress Manta VCF outputs
#98 opened Mar 7, 2023 by Faizal-Eeman
@Faizal-Eeman
Add workflow.nf for DELLY and BCFtools enhancement New feature or request
#81 opened Nov 8, 2022 by Faizal-Eeman
@Faizal-Eeman
1
Output folder name for stats files
#79 opened Oct 29, 2022 by Faizal-Eeman
Add --call-region to Manta command enhancement New feature or request
#78 opened Oct 25, 2022 by Faizal-Eeman
@Faizal-Eeman
3
Optimize CPU for Manta
#77 opened Oct 24, 2022 by Faizal-Eeman
@Faizal-Eeman
2
Remove cache=true in default.config
#53 opened Jul 20, 2022 by Faizal-Eeman
@Faizal-Eeman
1
Add GRIDSS2
#49 opened Jul 16, 2022 by tyamaguchi-ucla
@Faizal-Eeman
3
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