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zhuchcn committed Jun 20, 2023
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174 changes: 174 additions & 0 deletions 404.html
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<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<meta name="author" content="Chenghao Zhu">

<link rel="shortcut icon" href="/img/favicon.ico">
<title>moPepGen</title>
<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Lato:400,700|Roboto+Slab:400,700|Inconsolata:400,700" />

<link rel="stylesheet" href="/css/theme.css" />
<link rel="stylesheet" href="/css/theme_extra.css" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/styles/github.min.css" />
<link href="/assets/_mkdocstrings.css" rel="stylesheet" />

<script src="/js/jquery-2.1.1.min.js" defer></script>
<script src="/js/modernizr-2.8.3.min.js" defer></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/10.5.0/highlight.min.js"></script>
<script>hljs.initHighlightingOnLoad();</script>
</head>

<body class="wy-body-for-nav" role="document">

<div class="wy-grid-for-nav">


<nav data-toggle="wy-nav-shift" class="wy-nav-side stickynav">
<div class="wy-side-scroll">
<div class="wy-side-nav-search">
<a href="/." class="icon icon-home"> moPepGen</a>

</div>

<div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
<ul>
<li class="toctree-l1"><a class="reference internal" href="/.">Home</a>
</li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="/basics/">moPepGen Basics</a>
</li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="/quick-start/">Quick Start</a>
</li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="/vignette/">Vignette</a>
</li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="/file-format/">File Format</a>
</li>
</ul>
<p class="caption"><span class="caption-text">Commands</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="/generate-index/">generateIndex</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-vep/">parseVEP</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-reditools/">parseREDItools</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-star-fusion/">parseSTARFuion</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-fusion-catcher/">parseFusionCatcher</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-arriba/">parseArriba</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-rmats/">parseRMATS</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-circexplorer/">parseCIRCexplorer</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/call-variant/">callVariant</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/call-noncoding/">callNoncoding</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/filter-fasta/">filterFasta</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/split-fasta/">splitFasta</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/merge-fasta/">mergeFasta</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/encode-fasta/">encodeFasta</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/decoy-fasta/">decoyFasta</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/summarize-fasta/">summarizeFasta</a>
</li>
</ul>
</div>
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</nav>

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<nav class="wy-nav-top" role="navigation" aria-label="top navigation">
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<a href="/.">moPepGen</a>
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<div role="navigation" aria-label="breadcrumbs navigation">
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<h1 id="404-page-not-found">404</h1>

<p><strong>Page not found</strong></p>


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<footer>


<hr/>

<div role="contentinfo">
<!-- Copyright etc -->

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Built with <a href="https://www.mkdocs.org/">MkDocs</a> using a <a href="https://github.com/snide/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>.
</footer>

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</section>

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<div class="rst-versions" role="note" aria-label="versions">
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<span>
<a href="https://github.com/uclahs-cds/private-moPepGen/" class="fa fa-github" style="color: #fcfcfc"> GitHub</a>
</span>



</span>
</div>
<script>var base_url = '/';</script>
<script src="/js/theme_extra.js" defer></script>
<script src="/js/theme.js" defer></script>
<script defer>
window.onload = function () {
SphinxRtdTheme.Navigation.enable(true);
};
</script>

</body>
</html>
28 changes: 28 additions & 0 deletions assets/_mkdocstrings.css
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/* Avoid breaking parameters name, etc. in table cells. */
.doc-contents td code {
word-break: normal !important;
}

/* For pieces of Markdown rendered in table cells. */
.doc-contents td p {
margin-top: 0 !important;
margin-bottom: 0 !important;
}

/* Avoid breaking code headings. */
.doc-heading code {
white-space: normal;
}

/* Improve rendering of parameters, returns and exceptions. */
.doc-contents .field-name {
min-width: 100px;
}
.doc-contents .field-name, .field-body {
border: none !important;
padding: 0 !important;
}
.doc-contents .field-list {
margin: 0 !important;
}
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