A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
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Updated
Apr 11, 2023 - CSS
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
🦠 A comprehensive R package for deep mining microbiome
Network construction, analysis, and comparison for microbial compositional data
This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.
Analyses in R and Python Using curatedMetagenomicData
Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Microbiome Diversity Inspector - A platform for visual analysis of microbiome data.
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
Analyzing microbiome data from Gigante, Barro Colorado, Panama. Part of an Undergraduate Thesis (defended on May 13th, 2022).
A Bayesian model for the differential abundance analysis of microbiome sequencing data
The scripts contained in this repository relate directly to the work conducted by the Tree Root Microbiome Project (TRMP) led by Dr Steve Wakelin.
A Shiny interface for the MicrobiomeStat R package, designed to facilitate analysis and visualization of microbiome data.
A database for storing and analyzing omics data
A project to evaluate the differences in bacterial association networks from rainforest and converted pasturelands in the Colombian Amazon region using CCLasso and SPRING inference methods
Exploring different database implementations for clinical microbiome data
Machine learning for microbiome data
genome annotation analyzer for the microbiome analysis
Convert the American Gut Microbiome Project phenotype .xml files into a single .csv file.
Add a description, image, and links to the microbiome-data topic page so that developers can more easily learn about it.
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