metagenomics-abundance-normalize

• A metagenomics abundance normalizer which will take the abundance OTUs file and gives you a normalized ratio for plotting of the species.
• Normally when you plot OTUs, the OTU graph doesnt make sense as there are lot of OTUs and the clumpsy graph.
• This approach, takes a species abundance and then divide it by the total number of the OTUs associates with the species and gives you a number.
• You can plot as many species as you want and the analysis will look better and meaningful.

metagenomicsAbundanceNormalizer
               ("/Users/gauravsablok/Desktop/GitHub/shell_plotter/taxonomy_OTUs", \
                                                  "Clostridia", "100")
metagenomicsAbundanceNormalizer
            ("/Users/gauravsablok/Desktop/GitHub/shell_plotter/taxonomy_OTUs", \
                                                 "Porphyromonadaceae", "200")
2536.0

Gaurav Sablok
University of Potsdam
Potsdam,Germany