regenerate headers

swharden · Dec 3, 2018 · e5bec8c · e5bec8c
1 parent a8a3557
commit e5bec8c
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Showing 10 changed files with 20 additions and 3 deletions.
diff --git a/data/abfs/171116sh_0020_saved.abf b/data/abfs/171116sh_0020_saved.abf
diff --git a/data/abfs/f1_saved.abf b/data/abfs/f1_saved.abf
diff --git a/data/headers/130618-1-12.md b/data/headers/130618-1-12.md
@@ -42,7 +42,7 @@
 * fileGUID = ``
 * holdingCommand = `[-2.292757047572631e+37, -2.4422982394598744e+37, -2.4755296999448575e+37, ..., -2.3426061397760057e+37, -2.242912772441537e+37, -2.143218644516708e+37]`
 * protocol = `None`
-* protocolPath = `{`
+* protocolPath = `None`
 * stimulusByChannel = `[ChannelEpochs(ABF, 0)]`
 * sweepC = `array (1d) with values like: nan, nan, nan, ..., nan, nan, nan`
 * sweepChannel = `0`

diff --git a/data/headers/171116sh_0020_saved.md b/data/headers/171116sh_0020_saved.md
diff --git a/data/headers/171116sh_0020_saved.png b/data/headers/171116sh_0020_saved.png
diff --git a/data/headers/f1_saved.md b/data/headers/f1_saved.md
diff --git a/data/headers/f1_saved.png b/data/headers/f1_saved.png
diff --git a/data/headers/sine sweep magnitude 20.md b/data/headers/sine sweep magnitude 20.md
@@ -41,8 +41,8 @@
 * epochValues = `[-70.0, -70.0, -70.0]`
 * fileGUID = `{FA90BECA-056E-4757-9776-ADFD60958D8D}`
 * holdingCommand = `[-70.0, 0.0, 0.0, 0.0]`
-* protocol = `(untitled)`
-* protocolPath = `(untitled)`
+* protocol = `None`
+* protocolPath = `None`
 * stimulusByChannel = `[ChannelEpochs(ABF, 0)]`
 * sweepC = `array (1d) with values like: -70.00000, -70.00000, -70.00000, ..., -70.00000, -70.00000, -70.00000`
 * sweepChannel = `0`

diff --git a/data/readme.md b/data/readme.md
diff --git a/dev/python/2018-12-03 protocol binary.py b/dev/python/2018-12-03 protocol binary.py
@@ -0,0 +1,17 @@
+"""
+binary crap keeps ending up parsed as a string. fix this.
+"""
+
+import sys
+import os
+PATH_HERE = os.path.abspath(os.path.dirname(__file__))
+PATH_DATA = os.path.abspath(PATH_HERE+"../../../data/abfs/")
+PATH_SRC = os.path.abspath(PATH_HERE+"../../../src/")
+sys.path.insert(0, PATH_SRC)
+
+import pyabf
+import glob
+
+for abfFile in glob.glob(PATH_DATA+"/*.abf"):
+    abf = pyabf.ABF(abfFile) 
+    print(abf.abfID, abf.protocolPath)