Pilot Phase
Principal Investigators: Barbara Frei, Elizabeth Gow and Krista De Groot
Workflow design: Steffi LaZerte
The code in this workflow is released under GPL3.
This repository contains the workflow for obtaining and filtering Motus track data for the analysis of Urban/Rural stopovers during avian migration.
The reports contains the full annotated code and outputs run as of the dates on each page.
There are two ways to use this workflow
-
Walk through this website, familiarize yourself with the code and outputs [Most users]
-
Modify this workflow by working directly in the qmd scripts used to create this workflow [Some users]
- To do this, you can either create a PR to the workflow or clone it and work on your own copy.
- Each qmd file is setup to be run interactively (i.e. in an R session) as well as to be compiled non-interactively to create this script
- Be warned that compiling the whole site can take a long time, especially if new data is being downloaded!
- Use
renv::restore()to ensure you have the same packages and versions installed in this project to reproduce this workflow.