- Allow passing a max-template-date as an argument on colabfold batch

- Additional logging to allow better debuggability
- Log calling parameters on colabfold's scripts internal functions
- Create batches of msas before calling structure prediction on very high number
  sequence runs
- Make changes to support one .m8 template file per sequence on the
  structure prediction step (colabfold batch)
- General refactoring by separating functionality into functions thus
  increasing modularity and separation of concerns