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pysam-v0.15.4

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@AndreasHeger AndreasHeger released this 19 Jan 20:54
· 440 commits to master since this release

Release 0.15.4

Bugfix release. Principal reason for release is to update cython
version in order to fix pip install pysam with python 3.8.

  • [#879] Fix add_meta function in libcbcf.pyx, so meta-information
    lines in header added with this function have double-quoting rules
    in accordance to rules specified in VCF4.2 and VCF4.3 specifications
  • [#863] Force arg to bytes to support non-ASCII encoding
  • [#875] Bump minimum Cython version
  • [#868] Prevent segfault on Python 2.7 AlignedSegment.compare(other=None)
  • [#867] Fix wheel building on TravisCI
  • [#863] Force arg to bytes to support non-ASCII encoding
  • [#799] disambiguate interpretation of bcf_read return code
  • [#841] Fix silent truncation of FASTQ with bad q strings
  • [#846] Prevent segmentation fault on ID, when handling malformed records
  • [#829] Run configure with the correct CC/CFLAGS/LDFLAGS env va