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Brief 4
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KEichenseer committed Sep 1, 2023
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39 changes: 33 additions & 6 deletions docs/hackathon.html
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<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./hackathon.html">Day 2: Hackathon</a></li></ol></nav>
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<img src="./images/logo.png" alt="" class="sidebar-logo py-0 d-lg-inline d-none">
</a>
<div class="sidebar-tools-main tools-wide">
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<li><a href="#objective-2" id="toc-objective-2" class="nav-link" data-scroll-target="#objective-2">Objective</a></li>
<li><a href="#starting-points-to-consider-2" id="toc-starting-points-to-consider-2" class="nav-link" data-scroll-target="#starting-points-to-consider-2">Starting points to consider</a></li>
</ul></li>
<li><a href="#brief-4-stack_plot" id="toc-brief-4-stack_plot" class="nav-link" data-scroll-target="#brief-4-stack_plot">Brief 4: stack_plot</a>
<ul class="collapse">
<li><a href="#context-3" id="toc-context-3" class="nav-link" data-scroll-target="#context-3">Context</a></li>
<li><a href="#objective-3" id="toc-objective-3" class="nav-link" data-scroll-target="#objective-3">Objective</a></li>
<li><a href="#starting-points-to-consider-3" id="toc-starting-points-to-consider-3" class="nav-link" data-scroll-target="#starting-points-to-consider-3">Starting points to consider</a></li>
</ul></li>
</ul></li>
</ul>
<div class="toc-actions"><div><i class="bi bi-github"></i></div><div class="action-links"><p><a href="https://github.com/palaeoverse-community/hackathon/edit/main/hackathon.qmd" class="toc-action">Edit this page</a></p><p><a href="https://github.com/palaeoverse-community/hackathon/issues/new" class="toc-action">Report an issue</a></p></div></div></nav>
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<li>What is a useful output format to use the abundances for further analysis, for example with the <code>vegan</code> package?</li>
<li>How should data sets be handled that contain occurrences from different time intervals?</li>
</ul>
</section>
</section>
<section id="brief-4-stack_plot" class="level2">
<h2 class="anchored" data-anchor-id="brief-4-stack_plot">Brief 4: stack_plot</h2>
<section id="context-3" class="level3">
<h3 class="anchored" data-anchor-id="context-3">Context</h3>
<p>Visualising abundances, diversities or other metrics through time can be a challenge when showing several different groups in the same plot. Stacked area plots allow for a quick visual assessment of changing patterns.</p>
</section>
<section id="objective-3" class="level3">
<h3 class="anchored" data-anchor-id="objective-3">Objective</h3>
<ul>
<li>Develop a function (e.g.&nbsp;<code>stack_plot</code>) which plots a metric like abundance for different groups, stacked on top of each other</li>
</ul>
</section>
<section id="starting-points-to-consider-3" class="level3">
<h3 class="anchored" data-anchor-id="starting-points-to-consider-3">Starting points to consider</h3>
<ul>
<li>What input data does the function expect?</li>
<li>How does the function handle relative (summing to 1) and absolute metrics, and where can the legend be placed in either case?</li>
<li>What defines the order in which different groups are stacked?</li>
<li>What colour schemes could be used, and how should the colours be ordered for optimal visibility?</li>
</ul>


</section>
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11 changes: 5 additions & 6 deletions docs/index.html
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<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./index.html">Overview</a></li></ol></nav>
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</a>
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<a href="https://github.com/palaeoverse-community" rel="" title="GitHub organization" class="quarto-navigation-tool px-1" aria-label="GitHub organization"><i class="bi bi-github"></i></a>
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30 changes: 20 additions & 10 deletions docs/resources.html
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<meta property="og:title" content="R for Palaeobiologists - Resources">
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<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./acquisition.html">Day 1: Workshop</a></li><li class="breadcrumb-item"><a href="./resources.html">Resources</a></li></ol></nav>
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<ul>
<li><a href="#summary" id="toc-summary" class="nav-link active" data-scroll-target="#summary">Summary</a></li>
<li><a href="#content-under-construction" id="toc-content-under-construction" class="nav-link" data-scroll-target="#content-under-construction">Content (UNDER CONSTRUCTION)</a>
<li><a href="#content-under-construction" id="toc-content-under-construction" class="nav-link" data-scroll-target="#content-under-construction">Content (under construction)</a>
<ul class="collapse">
<li><a href="#data-acquisition" id="toc-data-acquisition" class="nav-link" data-scroll-target="#data-acquisition">Data Acquisition</a></li>
<li><a href="#data-preparation" id="toc-data-preparation" class="nav-link" data-scroll-target="#data-preparation">Data Preparation</a></li>
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<section id="summary" class="level2">
<h2 class="anchored" data-anchor-id="summary">Summary</h2>
<p>This unit of the workshop introduces a variety of resources that are of relevance to palaeobiological analyses and palaeontologists more broadly. The slides for the unit are available here and provide an overview to these commonly used resources, along with links to relevant websites and other content. This acts as both a summary of the resources mentioned in the other Units, as well as including additional resources which may be of interest.</p>
<p>This session is led by Christopher dean. If you encounter any issues while working with these resources, please contact him <a href="mailto:christopherdaviddean@gmail.com">here</a>. Additionally, our aim is to expand upon this content to make it a more widely available resource; if you have any resources that you use that you think might be helpful to others, please let Chris know and he will add them to the list.</p>
<p>This session is led by Christopher Dean. If you encounter any issues while working with these resources, please contact him <a href="mailto:christopherdaviddean@gmail.com">here</a>. Additionally, our aim is to expand upon this content to make it a more widely available resource; if you have any resources that you use that you think might be helpful to others, please let Chris know and he will add them to the list.</p>
</section>
<section id="content-under-construction" class="level2">
<h2 class="anchored" data-anchor-id="content-under-construction">Content (UNDER CONSTRUCTION)</h2>
<h2 class="anchored" data-anchor-id="content-under-construction">Content (under construction)</h2>
<section id="data-acquisition" class="level3">
<h3 class="anchored" data-anchor-id="data-acquisition">Data Acquisition</h3>
<p>These resources cover the acquisition of data for palaeontological analyses, including occurrence datasets and covariate/associated data.</p>
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<section id="problem-solving-tips" class="level3">
<h3 class="anchored" data-anchor-id="problem-solving-tips">Problem Solving Tips</h3>
<p>--</p>
<div class="quarto-figure quarto-figure-right">
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<p><img src="images/logo.png" class="img-fluid figure-img" style="width:25.0%"></p>
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</section>
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