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Added additional resources - more to add.
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ChristopherDavidDean committed Sep 7, 2023
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Expand Up @@ -38,20 +38,50 @@ These resources cover the acquisition of data for palaeontological analyses, inc

- [PARED](http://paleo-reefs.pal.uni-Erlangen.de)

#### Covariate Datasets
#### Other Relevant Datasets

- [Macrostrat](http://macrostrat.org)

- [Mindat](http://mindat.org)

- [USGS Geological Maps of North America](https://mrdata.usgs.gov/geology/state/)

- [WorldClim](http://worldclim.org)
- [Global Maximum Green Vegetation Fraction](https://doi.org/10.1175/JAMC-D-13-0356.1)

- [1km Resolution Global Digital Elevation Map](https://www.usgs.gov/centers/eros/science/usgs-eros-archive-digital-elevation-global-30-arc-second-elevation-gtopo30?qt-science_center_objects=0#qt-science_center_objects)

- [WorldClim](http://worldclim.org) - can be accessed via the 'getData' function of the 'raster' package.

- [ESA WorldCover](http://esa-worldcover.org/en)

#### Palaeogeographies

- [Deep Time Maps](https://deeptimemaps.com/about-us/)

- [Paleomap Project](http://www.scotese.com/)

#### Other places to find datasets

- [Zenodo](https://zenodo.org/)

#### Relevant Packages



### Data Preparation

These resources cover the preparation of data for palaeontological analyses, including data cleaning, organisation and transformation.

#### General Packages

#### Palaeontological Packages

- [Palaeoverse](https://doi.org/10.1111/2041-210X.14099)

- [CoordinateCleaner](https://doi.org/10.1111/2041-210X.13152)

- [FossilBrush](https://doi.org/10.1111/2041-210X.13966)

### Data Visualisation

These resources cover the various ways in which data can be visualised, from theoretical, practical and ethical angles.
Expand All @@ -66,6 +96,24 @@ These resources cover the various ways in which data can be visualised, from the

- [Colorhunt](https://colorhunt.co/)

- [Inkscape](https://inkscape.org/)

- [Gnu Image Manipulation Program (GIMP)](https://www.gimp.org/)

#### Packages

- ggplot2
- lattice
- scatterplot3d
- highcharter
- plotly
- Rgl
- viridis
- RColorBrewer
- wesanderson
- colorspace
- ggsci

### Writing Functions

R and function development
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- [Best coding practices in R](https://bookdown.org/content/d1e53ac9-28ce-472f-bc2c-f499f18264a3/speedtips.html)
- [R tools](https://cran.r-project.org/bin/windows/Rtools/)
- [Rcpp: Seamless R and C++ Integration](https://dirk.eddelbuettel.com/code/rcpp.html)
- [Avanced R](http://adv-r.had.co.nz/Rcpp.html)
- [Advanced R](http://adv-r.had.co.nz/Rcpp.html)

### General Palaeontology Resources

Expand All @@ -107,6 +155,28 @@ Efficiency

### General Programming Resources

#### CRAN Task Views

- [Phylogenetics](https://cran.r-project.org/web/views/Phylogenetics.html)

- [Spatial Data](https://cran.r-project.org/web/views/Spatial.html)

- [Ecological and Environmental Data](https://cran.r-project.org/web/views/Environmetrics.html)

- [Time Series Analysis](https://cran.r-project.org/web/views/TimeSeries.html)

#### Free R Books

- [R for Data Science (2nd Edition)](https://r4ds.hadley.nz/)

- [Hands-On Programming with R](https://rstudio-education.github.io/hopr/)

- [R Packages](https://r-pkgs.org/)

- [Cookbook for R](http://www.cookbook-r.com/)

- [Geocomputation with R](http://r.geocompx.org)

### \--

### Problem Solving Tips
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