Require R3.6 #122
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| # Address Sanitizer: Replicate CRAN's gcc-ASAN 'Additional Test' | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| - '**asan**' | |
| paths: | |
| - '.github/workflows/gcc-ASAN.yml' | |
| - 'src/**' | |
| - 'inst/include/**' | |
| - 'memcheck/**' | |
| - 'tests/testthat/**.R' | |
| - 'vignettes/**.Rmd' | |
| pull_request: | |
| paths: | |
| - '.github/workflows/gcc-ASAN.yml' | |
| - 'src/**' | |
| - 'inst/include/**' | |
| - 'memcheck/**' | |
| - 'tests/testthat/**.R' | |
| - 'vignettes/**.Rmd' | |
| name: gcc-ASAN | |
| jobs: | |
| mem-check: | |
| runs-on: ubuntu-20.04 | |
| name: AddressSanitizer ${{ matrix.config.test }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {test: 'tests'} | |
| - {test: 'examples'} | |
| - {test: 'vignettes'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| ASAN_OPTIONS: verify_asan_link_order=0 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: ASan preload | |
| run: | | |
| export LD_PRELOAD=$(gcc -print-file-name=libasan.so) | |
| - name: Create Makevars | |
| run: | | |
| echo "PKG_CFLAGS = -fsanitize=address -fno-omit-frame-pointer" > src/Makevars | |
| echo "PKG_CXXFLAGS = -fsanitize=address -fno-omit-frame-pointer" >> src/Makevars | |
| mkdir ~/.R | |
| echo "LDFLAGS = -fsanitize=address -fno-omit-frame-pointer" >> ~/.R/Makevars | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: release # CRAN uses devel, but takes ages to load deps. | |
| - name: Setup pandoc | |
| if: ${{ matrix.config.test }} == 'vignettes' | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = c('soft', 'Config/Needs/memcheck')), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = c('soft', 'Config/Needs/memcheck')) | |
| shell: Rscript {0} | |
| - name: Install package | |
| run: | | |
| cd .. | |
| R CMD build --no-build-vignettes --no-manual --no-resave-data TreeSearch | |
| R CMD INSTALL TreeSearch*.tar.gz | |
| cd TreeSearch | |
| - name: ASAN - memcheck ${{ matrix.config.test }} | |
| run: | | |
| Rscript memcheck/${{ matrix.config.test }}.R |