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REprintf

REprintf #277

Re-run triggered November 28, 2023 14:18
Status Failure
Total duration 6h 0m 28s
Artifacts

R-CMD-check.yml

on: push
Matrix: R-CMD-check
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3 errors and 21 warnings
ubuntu-20.04 (release)
package or namespace load failed for ‘sf’ in dyn.load(file, DLLpath = DLLpath, ...):
ubuntu-20.04 (4.1)
package or namespace load failed for ‘sf’ in dyn.load(file, DLLpath = DLLpath, ...):
ubuntu-20.04 (devel)
The operation was canceled.
macOS-latest (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
macOS-latest (release)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘TreeDistData’, ‘Biobase’, ‘MassSpecWavelet’, ‘dblog’, ‘marray’, ‘affy’, ‘limma’, ‘BiocVersion’, ‘ganalytics’, ‘starsdata’, ‘spDataLarge’, ‘hoa’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘argon2’, ‘rnaturalearthhires’, ‘rgdal’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘corpus.JSS.papers’, ‘ComplexHeatmap’, ‘cmdstanr’, ‘glmmADMB’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘sylly.de’, ‘sylly.es’, ‘globaltest’, ‘maptools’, ‘R2wd’, ‘M3C’, ‘INLA’, ‘lavaan.survey’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘texPreview’, ‘snpStats’, ‘gurobi’, ‘rrelaxiv’, ‘sangerseqR’, ‘ExactData’, ‘mail’, ‘IRanges’, ‘RDCOMClient’, ‘RTCGA.rnaseq’, ‘Icens’, ‘pageviews’, ‘rhdf5’, ‘mixOmics’, ‘extraTrees’, ‘genefilter’, ‘sva’ are not available
windows-latest (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
windows-latest (release)
dependencies 'graph', 'Biostrings', 'seqLogo', 'TreeDistData', 'Biobase', 'MassSpecWavelet', 'dblog', 'marray', 'affy', 'limma', 'BiocVersion', 'ganalytics', 'starsdata', 'spDataLarge', 'doMC', 'hoa', 'Rcgmin', 'Rvmmin', 'Rgraphviz', 'argon2', 'rnaturalearthhires', 'unix', 'rgdal', 'Rcampdf', 'Rpoppler', 'tm.lexicon.GeneralInquirer', 'corpus.JSS.papers', 'ComplexHeatmap', 'cmdstanr', 'glmmADMB', 'taxidata', 'biomaRt', 'KEGGgraph', 'sylly.de', 'sylly.es', 'rsyslog', 'globaltest', 'maptools', 'M3C', 'INLA', 'lavaan.survey', 'RandomFields', 'cairoDevice', 'RGtk2', 'texPreview', 'snpStats', 'rcom', 'RDCOMClient', 'gurobi', 'rrelaxiv', 'sangerseqR', 'ExactData', 'mail', 'IRanges', 'RTCGA.rnaseq', 'Icens', 'pageviews', 'rhdf5', 'mixOmics', 'extraTrees', 'genefilter', 'sva' are not available
ubuntu-20.04 (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
ubuntu-20.04 (release)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘TreeDistData’, ‘Biobase’, ‘MassSpecWavelet’, ‘dblog’, ‘marray’, ‘affy’, ‘limma’, ‘BiocVersion’, ‘ganalytics’, ‘starsdata’, ‘spDataLarge’, ‘hoa’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘argon2’, ‘rnaturalearthhires’, ‘rgdal’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘corpus.JSS.papers’, ‘ComplexHeatmap’, ‘cmdstanr’, ‘glmmADMB’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘sylly.de’, ‘sylly.es’, ‘globaltest’, ‘maptools’, ‘R2wd’, ‘M3C’, ‘INLA’, ‘lavaan.survey’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘texPreview’, ‘snpStats’, ‘gurobi’, ‘rrelaxiv’, ‘sangerseqR’, ‘ExactData’, ‘mail’, ‘IRanges’, ‘RDCOMClient’, ‘RTCGA.rnaseq’, ‘Icens’, ‘pageviews’, ‘rhdf5’, ‘mixOmics’, ‘extraTrees’, ‘genefilter’, ‘sva’ are not available
ubuntu-20.04 (release)
Fortran 2018 deleted feature: Arithmetic IF statement at (1)
ubuntu-20.04 (4.1)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
ubuntu-20.04 (4.1)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘TreeDistData’, ‘Biobase’, ‘MassSpecWavelet’, ‘dblog’, ‘marray’, ‘affy’, ‘limma’, ‘BiocVersion’, ‘ganalytics’, ‘OpenStreetMap’, ‘starsdata’, ‘spDataLarge’, ‘hoa’, ‘MuMIn’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘VGAMextra’, ‘argon2’, ‘rnaturalearthhires’, ‘rgdal’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘corpus.JSS.papers’, ‘ComplexHeatmap’, ‘bayesQR’, ‘cmdstanr’, ‘piecewiseSEM’, ‘glmmADMB’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘sylly.de’, ‘sylly.es’, ‘globaltest’, ‘maptools’, ‘R2wd’, ‘M3C’, ‘INLA’, ‘lavaan.survey’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘texPreview’, ‘snpStats’, ‘gurobi’, ‘rrelaxiv’, ‘convey’, ‘multiplex’, ‘sangerseqR’, ‘ExactData’, ‘mail’, ‘IRanges’, ‘RDCOMClient’, ‘RTCGA.rnaseq’, ‘Icens’, ‘p [... truncated]
ubuntu-20.04 (4.1)
Fortran 2018 deleted feature: Arithmetic IF statement at (1)
ubuntu-20.04 (devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
ubuntu-20.04 (devel)
dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘TreeDistData’, ‘Biobase’, ‘MassSpecWavelet’, ‘dblog’, ‘marray’, ‘affy’, ‘limma’, ‘BiocVersion’, ‘ganalytics’, ‘starsdata’, ‘spDataLarge’, ‘hoa’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘argon2’, ‘rnaturalearthhires’, ‘rgdal’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘corpus.JSS.papers’, ‘ComplexHeatmap’, ‘cmdstanr’, ‘glmmADMB’, ‘taxidata’, ‘biomaRt’, ‘KEGGgraph’, ‘sylly.de’, ‘sylly.es’, ‘globaltest’, ‘maptools’, ‘R2wd’, ‘M3C’, ‘INLA’, ‘lavaan.survey’, ‘RandomFields’, ‘cairoDevice’, ‘RGtk2’, ‘texPreview’, ‘snpStats’, ‘gurobi’, ‘rrelaxiv’, ‘sangerseqR’, ‘ExactData’, ‘mail’, ‘IRanges’, ‘RDCOMClient’, ‘RTCGA.rnaseq’, ‘Icens’, ‘pageviews’, ‘rhdf5’, ‘mixOmics’, ‘extraTrees’, ‘genefilter’, ‘sva’ are not available
ubuntu-20.04 (devel)
no DISPLAY variable so Tk is not available
ubuntu-20.04 (devel)
no DISPLAY variable so Tk is not available
ubuntu-20.04 (devel)
no DISPLAY variable so Tk is not available
ubuntu-20.04 (devel)
no DISPLAY variable so Tk is not available
ubuntu-20.04 (devel)
no DISPLAY variable so Tk is not available
ubuntu-20.04 (devel)
no DISPLAY variable so Tk is not available
ubuntu-20.04 (devel)
no DISPLAY variable so Tk is not available
ubuntu-20.04 (devel)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1)
ubuntu-20.04 (devel)
Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)