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v0.9.32

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@btmonier btmonier released this 22 Sep 12:08
· 7 commits to master since this release
  • Updated tableReport() method dispatch for all AssociationResults
    objects:
    • Will now return default statistics output for all association results
      when running tableReport(assocObj) where assocObj is an object
      of type AssociationResults
  • Removed HDF5 file export support
  • Improved logic support for plotPCA()
  • Added new PCAResults class
    • Allows for more controlled access of data and simplified downstream
      functions for end users
  • Add new function plotScree():
    • Generates quick scree plots from PCAResults objects
  • Add new function plotPCA():
    • Generates quick PCA plots from PCAResults objects
    • Allows for grouping from generated hierarchical clustering or grouping
      from metadata via the metadata parameter and subsequent mCol
      parameters.
  • Added new AssociationResults class
    • Allows for more controlled access of data and simplified downstream
      functions for end users
  • Added new function plotManhattan():
    • Supercedes older Manhattan plotting methods to work with new
      AssociationResults class.
  • Added new function plotQQ():
    • Plotting function for QQ results from AssociationResults class
  • Added new function plotManhattanQC():
    • Plotting function and QC method for zoomed in regions of interest
      across genome
  • Prior 3 functions also include interactive component that wraps
    ggplot2 objects with PlotlyJS components