Merge pull request #2 from lmtani/fix-samtools-test

🐛 Update task names for Sort commands
lmtani · Jan 3, 2024 · e757a90 · e757a90
2 parents 3ba1ebb + 5e86c96
commit e757a90
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diff --git a/tasks/samtools/converttocram.wdl b/tasks/samtools/converttocram.wdl
@@ -13,8 +13,7 @@ task ConvertToCram {
   }
 
   command <<<
-    set -e
-    set -o pipefail
+    set -e -o pipefail
     samtools --version | grep "^samtools" > version.txt
     if [ ~{stub} == "true" ]; then
       touch ~{output_basename}.cram \

diff --git a/tests/tasks/bcftools/bcftools_sort/test_sort_task.yaml b/tests/tasks/bcftools/bcftools_sort/test_sort_task.yaml
@@ -1,4 +1,4 @@
-- name: Check if Sort produces the expected outputs
+- name: Check if Bcftools Sort produces the expected outputs
   tags:
   - bcftools
   - bcftools/bcftools_sort

diff --git a/tests/tasks/samtools/samtools_sort/test_sort_task.yaml b/tests/tasks/samtools/samtools_sort/test_sort_task.yaml
@@ -1,4 +1,4 @@
-- name: Check if Sort produces the expected outputs
+- name: Check if Samtools Sort produces the expected outputs
   tags:
   - samtools
   - samtools/samtools_sort