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fastdatascience · Jun 21, 2024 · a292d90 · a292d90
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Showing 6 changed files with 11 additions and 9 deletions.
diff --git a/CITATION.cff b/CITATION.cff
@@ -12,7 +12,7 @@ authors:
 repository-code: 'https://github.com/fastdatascience/drug_named_entity_recognition'
 url: 'https://fastdatascience.com/drug-named-entity-recognition-python-library/'
 license: MIT
-version: 1.0.8
+version: 1.0.9
 date-released: '2024-04-14'
 url: 'https://zenodo.org/doi/10.5281/zenodo.10970631'
 doi: 10.5281/zenodo.10970631
diff --git a/README.md b/README.md
@@ -254,12 +254,12 @@ MIT License. Copyright (c) 2023 [Fast Data Science](https://fastdatascience.com)
 
 ## ✍️ Citing the Drug Named Entity Recognition library
 
-Wood, T.A., Drug Named Entity Recognition [Computer software], Version 1.0.8, accessed at [https://fastdatascience.com/drug-named-entity-recognition-python-library](https://fastdatascience.com/drug-named-entity-recognition-python-library), Fast Data Science Ltd (2024)
+Wood, T.A., Drug Named Entity Recognition [Computer software], Version 1.0.9, accessed at [https://fastdatascience.com/drug-named-entity-recognition-python-library](https://fastdatascience.com/drug-named-entity-recognition-python-library), Fast Data Science Ltd (2024)
 
 ```
 @unpublished{drugnamedentityrecognition,
     AUTHOR = {Wood, T.A.},
-    TITLE  = {Drug Named Entity Recognition (Computer software), Version 1.0.8},
+    TITLE  = {Drug Named Entity Recognition (Computer software), Version 1.0.9},
     YEAR   = {2024},
     Note   = {To appear},
     url = {https://zenodo.org/doi/10.5281/zenodo.10970631},

diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "drug-named-entity-recognition"
-version = "1.0.8"
+version = "1.0.9"
 description = "Drug Named Entity Recognition library to find and resolve drug names in a string (drug named entity linking)"
 readme = "README.md"
 keywords = ['drug', 'bio', 'biomedical', 'medical', 'pharma', 'pharmaceutical', 'ner', 'nlp', 'named entity recognition', 'natural language processing', 'named entity linking']

diff --git a/src/drug_named_entity_recognition/__init__.py b/src/drug_named_entity_recognition/__init__.py
@@ -27,7 +27,7 @@
 
 '''
 
-__version__ = "1.0.8"
+__version__ = "1.0.9"
 
 
 from drug_named_entity_recognition.drugs_finder import find_drugs
diff --git a/src/drug_named_entity_recognition/drugs_finder.py b/src/drug_named_entity_recognition/drugs_finder.py
@@ -822,7 +822,3 @@ def find_drugs(tokens: list, is_ignore_case: bool = True):
                 drug_matches.append((drug_canonical_to_data[m], token_idx, token_idx))
 
     return drug_matches
-
-
-drugs = find_drugs("i bought some Polysporin".split(" "))
-print(drugs)
diff --git a/tests/test_drugs_finder.py b/tests/test_drugs_finder.py
@@ -119,3 +119,9 @@ def test_polysporin(self):
 
         self.assertEqual(1, len(drugs))
         self.assertEqual("Bacitracin/polymyxin B", drugs[0][0]['name'])
+    #
+    # def test_glycyrrhiza(self):
+    #     drugs = find_drugs("i bought some Glycyrrhiza Spp. Root".split(" "))
+    #
+    #     self.assertEqual(1, len(drugs))
+    #     self.assertEqual("Glycyrrhiza", drugs[0][0]['name'])