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PEP compatible

PEPATAC is a pipeline for ATAC-seq data. For more information see: http://pepatac.databio.org/

Docs

Develop docs with:

mkdocs serve -f mkdocs.yml

Build and deploy with:

mkdocs build -f mkdocs.yml -d $CODEBASE/code.databio.org/pepatac/

Contributing

Pull requests welcome. Active development should occur in a development or feature branch.

Contributors

Citing

If you find PEPATAC useful in your research, please cite:

Jason P. Smith, M. Ryan Corces, Jin Xu, Vincent P. Reuter, Howard Y. Chang, and Nathan C. Sheffield. PEPATAC: An optimized ATAC-seq pipeline with serial alignments. bioRxiv (2021). DOI: 10.1101/2020.10.21.347054