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stitching coding regions from exon alignments for the protein to genome alignments.

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coding-stitcher-pangenome

  • a coding sticher for genome annotations, which stitch all your coding regions coming out of the exon alignments.
  • will produce the gene visualization for the genome browser and also for the panache.
codingsticher("/home/gaurav/Desktop/final_code_push/multi.gff",
            "/home/gaurav/Desktop/final_code_push/multi.fasta",
                           "/home/gaurav/Desktop/final_code_push/test.fasta")

Gaurav Sablok
University of Potsdam
Potsdam,Germany