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Phylonco v0.0.4
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@kche309 kche309 released this 04 Jul 11:52
· 401 commits to master since this release
v.0.0.4
e681d40

Requirements

  • Beast2 version 2.6.5 or greater
  • BEASTLabs version 1.9.0 or greater

Release notes

This Phylonco release includes the following features.

Error models:

  • GT16 diploid nucleotide error model (16 states) with allelic dropout and sequencing/amplification errors
  • Nucleotide error model (4 states - A, G, C, T) with a single error parameter epsilon and tips (1-e, e/3, e/3, e/3)
  • General error model (n states) with a single error parameter epsilon; generalises the nucleotide error model to n states
  • Binary error model of false positive and false negative errors

Substitution models:

  • GT16 phased diploid nucleotide model (16 states)
  • Binary substitution model
  • SiFit substitution models (2 or 3 states)
Assets 6
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