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refactor: Update resource requirements #198

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merged 2 commits into from
Jun 11, 2024
Merged

refactor: Update resource requirements #198

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3cf6679
chore: Update maximum time for rspr_exact
jvfe Jun 11, 2024
1e80d43
refactor: Add small profile same as default
jvfe Jun 11, 2024
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1 change: 1 addition & 0 deletions conf/modules.config
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Original file line number Diff line number Diff line change
Expand Up @@ -440,6 +440,7 @@ process {
}

withName: RSPR_EXACT {
time = { check_max( 24.h, 'time' ) }
errorStrategy = { task.exitStatus in [140] ? 'ignore' : 'retry' }
publishDir = [
path: { "${params.outdir}/dynamics/rSPR/exact" },
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7 changes: 4 additions & 3 deletions nextflow.config
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Expand Up @@ -188,9 +188,10 @@ profiles {
}
test { includeConfig 'conf/test.config' }
test_full { includeConfig 'conf/test_full.config' }
light { includeConfig 'conf/light.config' }
medium { includeConfig 'conf/medium.config' }
large { includeConfig 'conf/large.config' }
light { includeConfig 'conf/light.config' }
small { includeConfig 'conf/base.config' }
medium { includeConfig 'conf/medium.config' }
large { includeConfig 'conf/large.config' }
}

// Export these variables to prevent local Python/R libraries from conflicting with those in the container
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