refactor: Update resource requirements (#198)

* chore: Update maximum time for rspr_exact * refactor: Add small profile same as default
beiko-lab · Jun 11, 2024 · 8cde7c7 · 8cde7c7
1 parent 146af3f
commit 8cde7c7
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -440,6 +440,7 @@ process {
     }
 
     withName: RSPR_EXACT {
+        time   = { check_max( 24.h, 'time'    ) }
         errorStrategy = { task.exitStatus in [140] ? 'ignore' : 'retry' }
         publishDir = [
             path: { "${params.outdir}/dynamics/rSPR/exact" },

diff --git a/nextflow.config b/nextflow.config
@@ -188,9 +188,10 @@ profiles {
     }
     test      { includeConfig 'conf/test.config'      }
     test_full { includeConfig 'conf/test_full.config' }
-    light     { includeConfig 'conf/light.config' }
-    medium    { includeConfig 'conf/medium.config' }
-    large     { includeConfig 'conf/large.config' }
+    light     { includeConfig 'conf/light.config'     }
+    small     { includeConfig 'conf/base.config'      }
+    medium    { includeConfig 'conf/medium.config'    }
+    large     { includeConfig 'conf/large.config'     }
 }
 
 // Export these variables to prevent local Python/R libraries from conflicting with those in the container