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This repository has been archived by the owner on Jun 10, 2024. It is now read-only.

Releases: bcgsc/HLAminer

HLAminer v1.4

06 Oct 17:35
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-Ability to stream the (.sam) output of modern read aligners, directly into HLAminer.
-Initial support for predicting HLA types from long nanopore reads such as those from Oxford Nanopore Technologies.
-Better information/sub-routine/date tracking in hlaminer

HLAminer v1.3.1

30 Nov 15:45
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-More concise HLA allele summary in HLAminer_HPTASR.csv and HLAminer_HPRA.csv (associated .log is unchanged and lists all predictions)
-Keeps top two [highest-scoring by HLA group] predictions per gene and only the 'P' designated allele when the summary include HLA Sequences reported to have the same antigen binding domain.
-For the original output, refer to the HLAminer_v1-2.pl included in the ./bin directory
-A prediction example from MCF-7 PacBio RNA-seq reads is also provided