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fieldbioinformatics_unit_tests

Properly name fasta header #16

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Properly name fasta header

Properly name fasta header #16

Workflow file for this run

.github/workflows/unittests.yml at 0a7fc7e
name: fieldbioinformatics_unit_tests
on: [push, pull_request]
jobs:
build:
runs-on: ubuntu-latest
strategy:
fail-fast: false
steps:
- uses: actions/checkout@v3
- uses: mamba-org/setup-micromamba@v1
name: Setup dependencies
with:
environment-file: environment.yml
init-shell: >-
bash
cache-environment: true
post-cleanup: "all"
- name: Pip install artic
run: |
python3 -m pip install -e .
shell: micromamba-shell {0}
- name: Run unit tests
run: |
pytest -s tests/*_unit_test.py
shell: micromamba-shell {0}
- name: Run medaka test
run: |
./test-runner.sh medaka
shell: micromamba-shell {0}
- name: Run clair3 test
run: |
./test-runner.sh clair3
shell: micromamba-shell {0}
- name: Run minion_validator tests
run: |
pytest -s tests/minion_validator.py
shell: micromamba-shell {0}