lgm_mc

Lattice gas model of protein multiple sequence alignment. References:

1. Akira R. Kinjo (2018), Cooperative “folding transition” in the sequence space facilitates function-driven evolution of protein families, Journal of Theoretical Biology, Vol. 443, pp. 18-27, https://doi.org/10.1016/j.jtbi.2018.01.019,
2. Akira R. Kinjo (2017), Monte Carlo simulation of a statistical mechanical model of multiple protein sequence alignment, Biophysics and Physicobiology, Vol. 14, pp. 99-110, https://doi.org/10.2142/biophysico.14.0_99
3. Akira R. Kinjo (2015), A unified statistical model of protein multiple sequence alignment integrating direct coupling and insertions, Biophysics and Physicobiology, Vol. 13, pp.45-62, https://doi.org/10.2142/biophysico.13.0_45.