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Amatur Rahman edited this page Sep 10, 2017 · 1 revision

Welcome to the grna_crispr wiki!

How to run

Run main.sh

Dependencies

sudo pip install pandas
sudo pip install numpy

Instructions from https://github.com/gmarcais/Jellyfish

./configure --prefix=$HOME --enable-python-binding
make -j 4
sudo make install
make install
sudo ldconfig

This will install the python binding in $HOME/lib/python2.7/site-packages (adjust based on your Python version)

optional: export PYTHONPATH=$HOME/lib/python2.7/site-packages

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