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WangLab@UCSD

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  1. RESP RESP Public

    The code used to generate the results from Parkinson / Hard et al. 2022

    Python 16 7

  2. AntPack AntPack Public

    Forked from jlparkI/AntPack

    Tools for annotation, processing and ML for antibody sequences

    C++ 6

  3. TUnA TUnA Public

    TUnA: Transformer-based Uncertainty Aware model for PPI Prediction

    Python 3

  4. Benchmarking-tpLMs Benchmarking-tpLMs Public

    Python 3 1

  5. Taiji-reprogram Taiji-reprogram Public

    R 2

  6. SomaticMutation SomaticMutation Public

    Python 2

Repositories

Showing 10 of 19 repositories
  • AntPack Public Forked from jlparkI/AntPack

    Tools for annotation, processing and ML for antibody sequences

    Wang-lab-UCSD/AntPack’s past year of commit activity
    C++ 6 GPL-3.0 2 0 0 Updated Sep 19, 2024
  • Taiji_ALTRA Public

    Code for Taiji ALTRA project

    Wang-lab-UCSD/Taiji_ALTRA’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 3, 2024
  • Benchmarking-tpLMs Public
    Wang-lab-UCSD/Benchmarking-tpLMs’s past year of commit activity
    Python 3 1 0 0 Updated Aug 23, 2024
  • Taiji-reprogram Public
    Wang-lab-UCSD/Taiji-reprogram’s past year of commit activity
    R 2 MIT 0 0 0 Updated Aug 10, 2024
  • RESP2 Public

    Code needed to reproduce experiments from Parkinson / Hard et al. 2024

    Wang-lab-UCSD/RESP2’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jul 30, 2024
  • antibody_engineering_scoring Public

    Compares simple models (xgboost, xgpr) with fine-tuned LLMs / embeddings on some antibody property prediction tasks

    Wang-lab-UCSD/antibody_engineering_scoring’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 24, 2024
  • TUnA Public

    TUnA: Transformer-based Uncertainty Aware model for PPI Prediction

    Wang-lab-UCSD/TUnA’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Jun 4, 2024
  • Motif_Finding_Contextual_Regression Public
    Wang-lab-UCSD/Motif_Finding_Contextual_Regression’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Feb 12, 2024
  • uncertaintyAwareDeepLearn Public Forked from jlparkI/uncertaintyAwareDeepLearn

    A PyTorch class that implements an approximate Gaussian process as the last layer of a neural network

    Wang-lab-UCSD/uncertaintyAwareDeepLearn’s past year of commit activity
    HTML 0 MIT 2 0 0 Updated Jan 29, 2024
  • TIP-RA-CS Public

    The code needed to reproduce the analysis of methylation array data in James, Holers, Iyer, Prideaux, et al. 2023.

    Wang-lab-UCSD/TIP-RA-CS’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 11, 2023
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