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update readme
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laceysanderson committed May 8, 2019
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Expand Up @@ -18,23 +18,17 @@ This module provides support and visualization for partially analyzed data store
1. Install the dependencies listed above.
2. Install this module as you would any other Drupal module.

[See our documentation for more detailed installation instructions](https://analyzedphenotypes.readthedocs.io/en/latest/admin_guide/install.html).

## Features
### Release 1.0
- Specialized upload form for end users to submit filtered phenotypic data.
- Summary page showing how many traits, experiments, germplasm, etc. have phenotypic data.
- Dynamic quantitative trait chart summarizing the data for a given trait-project combination. This chart keeps site-years seperate but averages replicates.
- Specialized, permission controlled download form for end users to extract ether the raw, filtered or replicate-averaged phenotypic data.

### Release 2.0
- All the functionality mentioned in Release 1.0.
- Dynamic qualitative trait chart summarizing the data for a given trait-project combination. This chart also keeps site-years seperate but averages replicates.
- Specialized, permission controlled download form for end users to extract replicate-averaged phenotypic data.
- Trait Tripal Content Type providing pages for each Trait (One content type per organism/crop supported by your site). Include a number of specialized Tripal 3 Fields including the following functionality:
- describe the trait,
- link to ontology terms (e.g. crop ontologies, plant trait ontology),
- define the method and units used to collect the data,
- list experiments and site years with data for this trait,
- summarize observed values per experiment (same quantitative trait chart released in 1.0 but embedded on trait pages)
- list mean/min/max for each germplasm, site year, experiment combination
- Additional Tripal 3 Fields including
- Project Phenotype Summary: provides a summary of all phenotypic data associated with a given project.
- Germplasm Phenotype Summary: provides a summary of all phenotypic data collected from a given germplasm.
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