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  1. build-sourmash-index build-sourmash-index Public

    Build a database of sourmash signatures from a genomic library.

    Nextflow 2

  2. sra-demo-benchmark sra-demo-benchmark Public

    A demo workflow showing download, extraction, and compression of sequences from SRA.

    HTML 1

  3. shotgun-qc-nf shotgun-qc-nf Public archive

    A nextflow pipeline definition for generating quality control reports for shotgun metagenomic sequences.

    Nextflow

  4. bracken-nf bracken-nf Public archive

    Map metagenomic reads to operational taxonomic units (OTUs) using kraken2 and estimate bacterial abundances with bracken.

    Nextflow

  5. kraken2-humgut kraken2-humgut Public archive

    Build a kraken2 database and bracken mappings from the HumGut genome clusters.

    Nextflow

  6. Comparison_of_DA_microbiome_methods Comparison_of_DA_microbiome_methods Public archive

    Forked from nearinj/Comparison_of_DA_microbiome_methods

    R

Repositories

Showing 7 of 7 repositories
  • build-sourmash-index Public

    Build a database of sourmash signatures from a genomic library.

    UnseenBio/build-sourmash-index’s past year of commit activity
    Nextflow 2 AGPL-3.0 0 0 0 Updated Mar 21, 2022
  • sra-demo-benchmark Public

    A demo workflow showing download, extraction, and compression of sequences from SRA.

    UnseenBio/sra-demo-benchmark’s past year of commit activity
    HTML 1 AGPL-3.0 0 1 0 Updated Jul 31, 2021
  • coptr Public archive Forked from tyjo/coptr

    Accurate and robust inference of microbial growth dynamics from metagenomic sequencing

    UnseenBio/coptr’s past year of commit activity
    Python 0 GPL-3.0 5 0 0 Updated Jun 28, 2021
  • UnseenBio/Comparison_of_DA_microbiome_methods’s past year of commit activity
    R 0 20 0 0 Updated May 11, 2021
  • kraken2-humgut Public archive

    Build a kraken2 database and bracken mappings from the HumGut genome clusters.

    UnseenBio/kraken2-humgut’s past year of commit activity
    Nextflow 0 AGPL-3.0 0 0 0 Updated Oct 6, 2020
  • bracken-nf Public archive

    Map metagenomic reads to operational taxonomic units (OTUs) using kraken2 and estimate bacterial abundances with bracken.

    UnseenBio/bracken-nf’s past year of commit activity
    Nextflow 0 AGPL-3.0 0 0 0 Updated Jun 22, 2020
  • shotgun-qc-nf Public archive

    A nextflow pipeline definition for generating quality control reports for shotgun metagenomic sequences.

    UnseenBio/shotgun-qc-nf’s past year of commit activity
    Nextflow 0 AGPL-3.0 0 0 0 Updated Jun 21, 2020

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