Robokop UI

Reasoning Over Biomedical Objects linked in Knowledge Oriented Pathways

A friendly interface for users to create, upload, ask, and view biomedical questions and answers.

Development

Setup

1. Clone this repository locally.
2. Install the following dependencies.
   • Docker
   • Docker Compose
     • Install Node.js
     • Run npm install
3. (Optional) Add an .env file to the root directory to override any service urls.

Sample .env file:

PORT=7080

# Internal message storage
ROBOKACHE=http://localhost:8080/api

# External ARAs
STRIDER=https://strider.renci.org/1.2
ARAGORN=https://aragorn.renci.org/1.2
ROBOKOP=https://robokop-ara.apps.renci.org

# External Services
NODE_NORMALIZER=https://nodenormalization-sri.renci.org
NAME_RESOLVER=https://name-resolution-sri.renci.org
BIOLINK=https://raw.githubusercontent.com/biolink/biolink-model/2.2.5/biolink-model.yaml

Run Locally

npm run dev

You may also directly invoke docker-compose with the following command:

docker-compose -f docker-compose.base.yml -f docker-compose.dev.yml up --build

Deployment

Deploy using the following command (recommended):

docker-compose -f docker-compose.base.yml -f docker-compose.prod.yml up --build --renew-anon-volumes --abort-on-container-exit

Contributing

Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.