Metabolomics Workbench File Status Website

This repository holds the scripts required for creating and updating the Metabolomics Workbench File Status website along with the validation longs for each available analysis in both JSON and mwTab file formats.

Usage

The Metabolomics Workbench File Status website can be accessed through it's GitHub Pages hosted webpage at:

https://moseleybioinformaticslab.github.io/mwFileStatusWebsite/

Individual validation files can be accessed in the docs/validation_logs/ directory in this repository.

Installation

The mwFilesStatus website can be run locally but is intended to be setup on a Virtual Machine for automated updating.

Basic Installation

Clone the repository

git clone git@github.com:MoseleyBioinformaticsLab/mwFileStatusWebsite.git
cd mwFileStatusWebsite

Create a virtual environment and install the mwFileStatusWebsite package locally through pip.

python3 -m virtualenv venv
source venv/bin/activate
python3 -m pip install -e ../mwFileStatusWebsite

Installation for Virtual Machine Usage

Coming soon

Usage

Commandline Usage

mwFilesStatusWebsite validate
mwFilesStatusWebsite generate

Python3 Usage

python3 -m mwFilesStatusWebsite validate
python3 -m mwFilesStatusWebsite generate

License

This package is distributed under the BSD license.