Release 1.1.0

What's Changed

Dependencies updated

• Bump tornado from 6.1.0 to 6.3.3 by @dependabot in #762
• Bump cryptography from 2.9.2 to 41.0.3 by @dependabot in #760
• Bump pygments from 2.6.1 to 2.15.0 by @dependabot in #756
• Bump word-wrap from 1.2.3 to 1.2.4 in /webapp by @dependabot in #755
• Bump word-wrap from 1.2.3 to 1.2.4 in /tests/frontend/e2e by @dependabot in #754
• Bump restrictedpython from 5.0 to 6.1 by @dependabot in #737
• Bump scipy from 1.4.1 to 1.10.0 by @dependabot in #735
• Bump geppetto-meta from 1.2.0 to 1.2.8 by @ddelpiano

Bug fixing

• Show neuroml import error on failure, increase memory for jvm by @sanjayankur31 in #746
• Image compatibility with OSB tweaks by @enicolasgomez in #774
• Fix issue with fast delete of field content by @aranega in #763
• NETPYNE-184 fix dev deployment by @filippomc in #777
• Fix netpyne Dockerfile by @aranega in #783
• fix selector names for tutorials by @SimaoBolota-MetaCell in #780
• Fix/14nov by @enicolasgomez in #781
• Feature/188 range fields fix by @enicolasgomez in #785
• Update "installation" section of the README.md by @aranega in #765
• Fixed state changes on type changes by @enicolasgomez in #788
• Fixed to last reported cases by @enicolasgomez in #790
• skipping failed test by @SimaoBolota-MetaCell in #792
• Netpyne-24 Escape variables that are transmitted to python by @aranega in #772
• NETPYNE-200: adding subcellular icon by @ddelpiano in #805
• Cherry picked iframe visibility changes after rebase by @enicolasgomez in #779
• Fixed issues on NETPYNE-189 and NETPYNE-187 by @enicolasgomez in #802
• Fix OSB integration by @filippomc in #808
• Fix dockerfile by @filippomc in #809
• Feature/netpyne 208 by @ddelpiano in #813
• fixing versions in dialog by @ddelpiano in #814
• aligning package files used for develop by @ddelpiano in #815
• Widget Order by @enicolasgomez in #819

New features

• netpyne-172 Add complex stimulation for population by @aranega in #786
• NETPYNE-200: adding subcellular icon by @ddelpiano in #805
• Netpyne-44 Add mechanism to be able to react on kernel status change from the by @aranega in #773
• NETPYNE-193 Add validation to netpyne-ui simulation by @aranega in #799
• Feature/199 - Population cell list by @D-GopalKrishna in #801

New Contributors

• @sanjayankur31 made their first contribution in #746
• @D-GopalKrishna made their first contribution in #801

Full Changelog: 1.0.0...1.1.0

1.0.0

• Improved errors for automated testing
• Mod files loading error fallback handling
• Improved sync mechanism performance with Jupyter Hub
• Fix lfpykit head model load
• Fix ny model head model load
• Updated to geppetto 1.2.0
• Tutorials showcase implementation
• Improved installation scripts
• Load Model and Save Model to workspace capabilities
• Fixed random color picker
• Fixded issues with timeout when rendering some plots
• Several miscelanous UI improvements and fixes

NetPyNE-UI Release 0.9.1 alpha

• The color picker is removed from the "hover menu" and is integrated directly in each tree item
• Make color pref. menu title explicit
• Cleanup scripts and installation process
• Remove references to icons inside node_modules
• Moved to latest netypne (1.0.3)
• Fix issue w/ model double instantiation
• Fixed margin issue with bokeh plot toolbar styling
• Fix sublevel color picker
• Fixed some layout issues to avoid scrolling on navigation bar and plots
• Fixed redux version update
• Added optuna to fix installation dependencies
• Fixing font awesome icons

NetPyNE-UI Release 0.9.0 alpha

• Fixing spinner issue
• Fixed unspecific plots issues
• Cleaned up scripts and installation process
• Fixing base layout passed to the createStore
• Fixed spinner message depending on the application state
• Added color picker
• Fix issue of colors for inner containers
• Fix not opening SyncMechParams
• Fix "back" button when an error occurs for an ActionDialog

NetPyNE-UI Release 0.8.1 alpha

• Fix experiments param assigment
• Create PlotRateSpectrogram component
• New component for the rate spectrogram plot
• Bumped to jupyter-geppetto 1.1.4
• Added force flag to jupyer installation scripts
• Changed overflow to hidden on MuiBox css to avoid scrolling bars on menu

NetPyNE-UI Release 0.7.0 alpha

New in this release:

• UI improvements
• bug fixes
• added error dialog that displays message & stacktrace
• general stability improvements
• added mechanism to automatically restart kernel on page refresh if unresponsive
• global jupyter config won't be affected by NetPyNe-UI installation anymore
• use iplot method for granger plot

NetPyNE-UI Release 0.6.0 alpha

• New interface and UX design.
• Latest netpyne version supported
• Latest NEURON supported

NetPyNE-UI Release 0.5.2 alpha

Minor Release:

• Fixes font size in plots
• Fixes cells position within network
• Fixes UI layout in some scenarios

NetPyNE-UI Release 0.5 alpha

New Features

• New AppBar component with a different interaction for the user for the instantiation and simulation processes.
• Export/Import to/from a python file.
• Export/Import to/from a json file.
• New Tabbed Drawer component introduced for the JS and Python console.
• CellParams hierarchy improved to help the users during the navigation.
• Added RxD plot.
• New Logo and colors.
• Netpyne-UI migrated to the latest jupyter notebook library.
• Geppetto jupyter extension and synch component between JS frontend and python backend refactoring for code wise and performance improvements.
• Name validation feature, now checking for valid chars in the string and as well for collision with a name already present.
• Casper tests coverage extended.

Fixes

• Fixed the format type validation for data inserted by the user.
• Fixed conds in the netParams.stimTargetParams that should be empty and before was populated with an empty Population.
• Fixed the default value in connectivity rules that should be empty by default.
• Fixed sections displayed per CellRule whereby before all the sections were displayed.
• Fixed rename for netpyne stimulation source.
• Fixed an issue where if the name of an element of the UI (e.g. Population) was renamed with an empty string therefore the element was inaccessible in a second moment.
• Fixed an issue whereby if the same name was used for the same component type (e.g. cellRule), the 2 components were colliding into a single one on the frontend side but not on the backed.
• Fixed the coordinateRange component synchronization between frontend and backend when a component using this component was renamed.

NetPyNE-UI Release 0.4 alpha

New Features

• Automation testing implemented with CasperJS.
• Added configurable plots for simulation.
• Added stimulation sources, stimulation targets and synapse mechanisms.
• Cell template can now be imported into CellRules.
• Added density mechanism.
• Added network attributes.
• Improved the import for model and cells with the implementation of a file browser.
• Delete buttons on hover implemented to delete a components (e.g. Population, CellRule, etc.) and not the entire model.
• Added the timeRange component to handle beginning and end time frames.
• Implemented an error handler.
• The GUI now supports pypi installation, docker file and virtualbox image.

Fixes

• some tabs some(e.g. synMechParams) were not displaying the data after coming back from the instantiation window.
• Fixed an issue in the Population's spatial distribution configuration with min and max axis that were not handling correctly decimal values and special characters.
• Fixed with the rename of the stimuatlion sources and stimulation targets.
• Fixed the synchParams not appearing in the synMechs.
• Fixed the LFP plot now showing properly.
• Fixed the dialog transition for import cell template and import model due to the spinner that was overlapping with the dialog.