v0.4.0

MicrobiomeAnalysis v0.4.0

Diff since v0.3.0

Merged pull requests:

• CompatHelper: bump compat for SummarizedExperiments to 0.2, (keep existing compat) (#54) (@github-actions[bot])
• Initialise tutorial on wrangling and filtering real data (#55) (@RiboRings)
• Make transform object type requirements looser (#56) (@RiboRings)

v0.3.0

MicrobiomeAnalysis v0.3.0

Diff since v0.2.0

Closed issues:

• Register version 0.2.0 (#38)
• Importers (#39)
• Import CSV (#45)
• Convert from CommunityProfile to SE and back (#48)

Merged pull requests:

• Csv import (#46) (@RiboRings)
• Create converter from CommunityProfile to SE (#47) (@RiboRings)
• Conclude CommunityProfile conversion utils and corresponding documentation (#49) (@RiboRings)
• Introduce sorting functions (#51) (@RiboRings)
• Reexport SE and MAE utilities (#52) (@RiboRings)

v0.2.0

MicrobiomeAnalysis v0.2.0

Diff since v0.1.0

Closed issues:

• Register Mia.jl (#18)
• Add example data (#21)
• Linkings to related packages (#22)
• MultiAssayExperiment example data (#24)
• Link broken (#29)
• Outdated links in README (#30)
• Generic instructions (#32)

Merged pull requests:

• Add features to work with MultiAssayExperiment objects (#25) (@RiboRings)
• Replace repl with example chunks (#26) (@RiboRings)
• Added transform functions (#27) (@RiboRings)
• Introduce docs on transform funcs (#28) (@RiboRings)
• styling README (#31) (@antagomir)
• CompatHelper: add new compat entry for CSV at version 0.10, (keep existing compat) (#33) (@github-actions[bot])
• CompatHelper: add new compat entry for MultiAssayExperiments at version 0.1, (keep existing compat) (#34) (@github-actions[bot])
• Introduce second example dataset (#35) (@RiboRings)
• Testing new features (#37) (@RiboRings)

v0.1.0

MicrobiomeAnalysis v0.1.0

Merged pull requests:

• CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#1) (@github-actions[bot])
• CompatHelper: add new compat entry for FdeSolver at version 1, (keep existing compat) (#2) (@github-actions[bot])
• CompatHelper: add new compat entry for MultivariateStats at version 0.9, (keep existing compat) (#3) (@github-actions[bot])
• CompatHelper: add new compat entry for Microbiome at version 0.9, (keep existing compat) (#4) (@github-actions[bot])
• CompatHelper: add new compat entry for DataFrames at version 1, (keep existing compat) (#5) (@github-actions[bot])
• CompatHelper: add new compat entry for DataStructures at version 0.18, (keep existing compat) (#6) (@github-actions[bot])
• Testing (#7) (@RiboRings)
• CompatHelper: add new compat entry for SummarizedExperiments at version 0.1, (keep existing compat) (#10) (@github-actions[bot])
• Deps (#11) (@RiboRings)
• Fde wrapper (#12) (@RiboRings)
• Fixes (#13) (@RiboRings)
• Make function to plot abundances (#14) (@RiboRings)
• CompatHelper: add new compat entry for Plots at version 1, (keep existing compat) (#15) (@github-actions[bot])
• Add simple tests for abundance_plot and LVmodel (#16) (@RiboRings)
• Include test on beta operations (#17) (@RiboRings)
• Change package name globally (#19) (@RiboRings)
• Replace MiaTools with MicrobiomeAnalysis globally (#20) (@RiboRings)