2023 update #27
Workflow file for this run
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| name: Image build and test | |
| env: | |
| IMAGE_NAME: geoscienceaustralia/dea-coastlines | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| paths: | |
| - 'coastlines/**' | |
| - 'data/**' | |
| - 'tests/**' | |
| - '.github/workflows/dea-coastlines-image.yml' | |
| - 'Dockerfile' | |
| - 'requirements.in' | |
| - 'requirements.txt' | |
| - 'setup.py' | |
| - 'codecov.yaml' | |
| pull_request: | |
| branches: | |
| - develop | |
| paths: | |
| - 'coastlines/**' | |
| - 'data/**' | |
| - 'tests/**' | |
| - '.github/workflows/dea-coastlines-image.yml' | |
| - 'Dockerfile' | |
| - 'requirements.in' | |
| - 'requirements.txt' | |
| - 'setup.py' | |
| - 'codecov.yaml' | |
| release: | |
| types: [edited, published] | |
| permissions: | |
| id-token: write # Required for requesting Json web token | |
| contents: write # Required for actions/checkout | |
| pull-requests: write # Required for validation results comment bot | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Configure AWS credentials | |
| uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| role-to-assume: arn:aws:iam::060378307146:role/github-actions-dea-notebooks--sandbox | |
| aws-region: ap-southeast-2 | |
| role-duration-seconds: 7200 # 2 hours | |
| - name: Get database credentials | |
| run: | | |
| username_password=$(aws ssm get-parameter --name /dea-sandbox-eks/sandbox_reader/db.creds --with-decryption --query Parameter.Value --output text) | |
| echo DATACUBE_DB_URL=postgresql://${username_password}@localhost:5432/odc >> $GITHUB_ENV | |
| - name: Open port forward to RDS | |
| run: | | |
| npx basti connect \ | |
| --custom-target-vpc vpc-086904199e505c1f6 \ | |
| --custom-target-host db-aurora-dea-sandbox-eks-1.cos5zfpkso9m.ap-southeast-2.rds.amazonaws.com \ | |
| --custom-target-port 5432 \ | |
| --local-port 5432 & | |
| # Wait until the connection comes up, but, if it doesn't, don't hang forever. | |
| npx wait-on --timeout 120000 --interval 1000 tcp:127.0.0.1:5432 | |
| echo "PGPORT=5432" >> $GITHUB_ENV | |
| echo "PGHOST=localhost" >> $GITHUB_ENV | |
| - name: Build DEA Coastlines docker image | |
| timeout-minutes: 30 | |
| shell: bash | |
| run: | | |
| docker build -t dea_coastlines . | |
| - name: Run integration tests | |
| run: | | |
| # Download tide modelling files and unzip | |
| wget --no-verbose https://www.dropbox.com/s/uemd8ib2vfw5nad/tide_models.zip?dl=1 -O tide_models.zip | |
| unzip -q tide_models.zip | |
| # Run integration tests using Docker | |
| docker run \ | |
| --net=host \ | |
| --env DATACUBE_DB_URL \ | |
| --env AWS_SESSION_TOKEN \ | |
| --env AWS_REGION \ | |
| --env AWS_ACCESS_KEY_ID \ | |
| --env AWS_SECRET_ACCESS_KEY \ | |
| --env AWS_SESSION_TOKEN \ | |
| --volume ${GITHUB_WORKSPACE}:/code \ | |
| --volume ${GITHUB_WORKSPACE}/tide_models:/var/share/tide_models \ | |
| dea_coastlines pytest -v --cov=coastlines --cov-report=xml tests | |
| ls -l . | |
| ls -l ./data/validation/processed/ | |
| ls -l ./tests/ | |
| git status | |
| # Commit validation results produced by integration tests back into repo | |
| - name: Commit validation results into repository | |
| uses: stefanzweifel/git-auto-commit-action@v4 | |
| if: github.event_name == 'pull_request' | |
| continue-on-error: true | |
| with: | |
| commit_message: Automatically update integration test validation results | |
| file_pattern: 'tests/stats_tests.png tests/stats_tests.csv tests/README.md' | |
| # Post validation tesults as comment on PR | |
| - name: Post validation results as comment | |
| uses: mshick/add-pr-comment@v2 | |
| if: github.event_name == 'pull_request' | |
| with: | |
| message: | | |
| ![](https://github.com/GeoscienceAustralia/dea-coastlines/blob/${{ github.head_ref }}/tests/stats_tests.png?raw=true") | |
| For full integration test results, refer to the [Tests directory README](https://github.com/GeoscienceAustralia/dea-coastlines/tree/${{ github.head_ref }}/tests). | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |