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Merge pull request #183 from FlyBase/release_2024-06-13
release files 2024-06-13
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,3 @@ | ||
| FBcv:0007545 ! decreased rate of proboscis extension reflex has unnapproved def_dbxref type: FB:FBrf0044924 | ||
| FBcv:0007533 ! increased rate of proboscis extension reflex has unnapproved def_dbxref type: FB:FBrf0044924 | ||
| FBcv:0000680 ! abnormal proboscis extension reflex has unnapproved def_dbxref type: FB:FBrf0044924 | ||
| FBcv:0007545 ! decreased rate of proboscis extension reflex has unnapproved def_dbxref type: FB:FBrf0044924 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| ?prefix ?numberOfClasses | ||
| "ENVO" 206 | ||
| "OBI" 1 | ||
| "FBbt" 230 | ||
| "CARO" 19 | ||
| "FBdv" 125 | ||
| "BFO" 16 | ||
| "FBcv" 257 | ||
| "RO" 1 | ||
| "NBO" 17 | ||
| "PCO" 7 | ||
| "" 2 | ||
| "GO" 239 | ||
| "CL" 4 | ||
| "PATO" 134 | ||
| "CHEBI" 139 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,59 +1,11 @@ | ||
| 3 axioms in left ontology but not in right ontology: | ||
| - Annotation(<http://www.geneontology.org/formats/oboInOwl#date> "25:04:2024 13:28"^^xsd:string) | ||
| - Annotation(owl:versionInfo "2024-04-25"^^xsd:string) | ||
| - OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/dpo/dpo-simple.owl>) VersionIRI(<http://purl.obolibrary.org/obo/dpo/dpo-simple/dpo/releases/2024-04-25/dpo-simple.owl/dpo/dpo-simple.owl>)) | ||
| 4 axioms in left ontology but not in right ontology: | ||
| - Annotation(<http://creativecommons.org/ns#attributionURL> "http://dx.doi.org/10.1186/2041-1480-4-30"^^xsd:string) | ||
| - Annotation(<http://www.geneontology.org/formats/oboInOwl#date> "13:06:2024 12:35"^^xsd:string) | ||
| - Annotation(owl:versionInfo "2024-06-13"^^xsd:string) | ||
| - OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/dpo/dpo-simple.owl>) VersionIRI(<http://purl.obolibrary.org/obo/dpo/dpo-simple/dpo/releases/2024-06-13/dpo-simple.owl/dpo/dpo-simple.owl>)) | ||
|
|
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| 53 axioms in right ontology but not in left ontology: | ||
| + Annotation(<http://www.geneontology.org/formats/oboInOwl#date> "23:02:2024 08:54"^^xsd:string) | ||
| + Annotation(owl:versionInfo "2024-02-23"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000111> <http://purl.obolibrary.org/obo/BFO_0000050> "is part of"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000111> <http://purl.obolibrary.org/obo/BFO_0000051> "has part"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000111> <http://purl.obolibrary.org/obo/BFO_0000063> "precedes"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000111> <http://purl.obolibrary.org/obo/RO_0000052> "inheres in"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/BFO_0000050> "my brain is part of my body (continuant parthood, two material entities)"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/BFO_0000050> "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/BFO_0000050> "this day is part of this year (occurrent parthood)"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/BFO_0000051> "my body has part my brain (continuant parthood, two material entities)"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/BFO_0000051> "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/BFO_0000051> "this year has part this day (occurrent parthood)"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/RO_0000052> "this fragility is a characteristic of this vase"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/RO_0000052> "this red color is a characteristic of this apple"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/BFO_0000050> "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/BFO_0000050> "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/BFO_0000050> "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'."^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/BFO_0000051> "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part."^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/BFO_0000051> "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/BFO_0000051> "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'."^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/RO_0002314> "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/RO_0002503> "This relation is provided in order to support the use of relational qualities such as 'concentration of'; for example, the concentration of C in V is a quality that inheres in V, but pertains to C."^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/RO_0002083> "David Osumi-Sutherland"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/RO_0002314> <https://orcid.org/0000-0002-6601-2165>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/RO_0002503> <https://orcid.org/0000-0002-6601-2165>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/RO_0002573> <https://orcid.org/0000-0002-6601-2165>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000118> <http://purl.obolibrary.org/obo/BFO_0000050> "part_of"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000118> <http://purl.obolibrary.org/obo/BFO_0000051> "has_part"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000118> <http://purl.obolibrary.org/obo/RO_0000052> "inheres_in"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000118> <http://purl.obolibrary.org/obo/RO_0002314> "inheres in part of"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000119> <http://purl.obolibrary.org/obo/RO_0002314> <http://www.ncbi.nlm.nih.gov/pubmed/20064205>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000119> <http://purl.obolibrary.org/obo/RO_0002351> "SIO"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000119> <http://purl.obolibrary.org/obo/RO_0002503> <http://www.ncbi.nlm.nih.gov/pubmed/20064205>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000119> <http://purl.obolibrary.org/obo/RO_0002573> <http://www.ncbi.nlm.nih.gov/pubmed/20064205>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000232> <http://purl.obolibrary.org/obo/RO_0002573> "This relation is intended to be used in combination with PATO, to be able to refine PATO quality classes using modifiers such as 'abnormal' and 'normal'. It has yet to be formally aligned into an ontological framework; it's not clear what the ontological status of the \"modifiers\" are."^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0001900> <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/RO_0001901>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0001900> <http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/RO_0001901>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0001900> <http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/RO_0001901>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0001900> <http://purl.obolibrary.org/obo/RO_0002314> <http://purl.obolibrary.org/obo/RO_0001901>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0001900> <http://purl.obolibrary.org/obo/RO_0002351> <http://purl.obolibrary.org/obo/RO_0001901>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0040042> <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/BFO_0000002>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0040042> <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/BFO_0000003>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0040042> <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/BFO_0000004>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0040042> <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/BFO_0000017>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0040042> <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/BFO_0000019>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0040042> <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/BFO_0000020>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/RO_0040042> <http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/BFO_0000031>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/dpo/dpo-simple#seeAlso> <http://purl.obolibrary.org/obo/BFO_0000050> "http://www.obofoundry.org/ro/#OBO_REL:part_of"^^xsd:string) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/dpo/dpo-simple#seeAlso> <http://purl.obolibrary.org/obo/BFO_0000050> "https://wiki.geneontology.org/Part_of"^^xsd:anyURI) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/dpo/dpo-simple#seeAlso> <http://purl.obolibrary.org/obo/BFO_0000050> <http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/dpo/dpo-simple#seeAlso> <http://purl.obolibrary.org/obo/BFO_0000050> <http://ontologydesignpatterns.org/wiki/Submissions:PartOf>) | ||
| + AnnotationAssertion(<http://purl.obolibrary.org/obo/dpo/dpo-simple#seeAlso> <http://purl.obolibrary.org/obo/RO_0002314> <http://purl.obolibrary.org/obo/ro/docs/reflexivity/>) | ||
| + OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/dpo/dpo-simple.owl>) VersionIRI(<http://purl.obolibrary.org/obo/dpo/dpo-simple/dpo/releases/2024-02-23/dpo-simple.owl/dpo/dpo-simple.owl>)) | ||
| 4 axioms in right ontology but not in left ontology: | ||
| + Annotation(<http://purl.obolibrary.org/obo/dpo/dpo-simple#attributionURL> "http://dx.doi.org/10.1186/2041-1480-4-30"^^xsd:string) | ||
| + Annotation(<http://www.geneontology.org/formats/oboInOwl#date> "25:04:2024 13:28"^^xsd:string) | ||
| + Annotation(owl:versionInfo "2024-04-25"^^xsd:string) | ||
| + OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/dpo/dpo-simple.owl>) VersionIRI(<http://purl.obolibrary.org/obo/dpo/dpo-simple/dpo/releases/2024-04-25/dpo-simple.owl/dpo/dpo-simple.owl>)) |
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