MORTAR v1.2-beta.1 for further testing before official release;

CITATION.cff

@@ -1,6 +1,6 @@
 cff-version: 1.2.0
 title: MORTAR
-version: "1.2.0.0-beta"
+version: "1.2.0.0-beta.1"
 message: "If you use this software, please cite it as below."
 type: software
 authors:
@@ -26,7 +26,7 @@ authors:
     given-names: "Achim"    
     orcid: "https://orcid.org/0000-0003-0722-4229"
 doi: "10.5281/zenodo.6984804"
-date-released: 2024-04-15
+date-released: 2024-04-30
 url: "https://github.com/FelixBaensch/MORTAR"
 license: MIT
 references:

README.md

@@ -65,12 +65,12 @@ Pre-compiled and executable MORTAR distributions can be found attached to the
 
 <p>
 <b>Windows:</b> A convenient Windows OS installer executable for MORTAR is available 
-(click <a href="https://github.com/FelixBaensch/MORTAR/releases/download/v1.2.0.0-beta/MORTAR_v1.2.0.0-beta_WINx64_installer.exe">here</a> to 
+(click <a href="https://github.com/FelixBaensch/MORTAR/releases/download/v1.2.0.0-beta.1/MORTAR_v1.2.0.0-beta.1_WINx64_installer.exe">here</a> to 
 automatically download the installer .exe of the latest version). Download the installer 
 executable, start, and follow the instructions to install MORTAR. Note that the installation includes a full 
 Java Runtime Environment (JRE). After installation, create a shortcut to an appropriate MORTAR start batch file on your 
 Windows desktop. E.g. for MORTAR to use up to 4 gigabyte of RAM, copy a shortcut to batch file "MORTAR.bat" which is 
-located in the MORTAR program folder (default "C:\Program Files\MORTAR\MORTARv1.2.0.0-beta\bin" or the path specified at 
+located in the MORTAR program folder (default "C:\Program Files\MORTAR\MORTARv1.2.0.0-beta.1\bin" or the path specified at 
 installation). To start MORTAR, double-click the created shortcut. MORTAR can be uninstalled by the provided 
 Uninstall.exe executable in the MORTAR program folder or standard Windows functions.
 <br>
@@ -89,15 +89,15 @@ with your chosen initially allocated memory (-Xms) and maximum value (-Xmx) acco
 described below. As an alternative way, they should also work on Windows.
 </p>
 
-<p><b>Linux and macOS:</b> Every release has the executable Java ARchive (JAR) "MORTAR-fat-1.2.0.0-beta.jar"
+<p><b>Linux and macOS:</b> Every release has the executable Java ARchive (JAR) "MORTAR-fat-1.2.0.0-beta.1.jar"
 attached, which contains the packaged MORTAR code together with all dependencies 
-(click <a href="https://github.com/FelixBaensch/MORTAR/releases/download/v1.2.0.0-beta/MORTAR-fat-1.2.0.0-beta.jar">here</a>
+(click <a href="https://github.com/FelixBaensch/MORTAR/releases/download/v1.2.0.0-beta.1/MORTAR-fat-1.2.0.0-beta.1.jar">here</a>
 to automatically download the JAR of the latest version). 
 To run MORTAR (with up to 4 GB of RAM available, e.g.), 
 execute the JAR from the command-line using</p>
 
 ```shell
-java -jar -Xms512m -Xmx4g <path to>MORTAR-fat-1.2.0.0-beta.jar
+java -jar -Xms512m -Xmx4g <path to>MORTAR-fat-1.2.0.0-beta.1.jar
 ```
 
 A JDK or JRE of version 21.0.1 or higher needs to be installed on your system and linked to the "java" command. 
@@ -106,8 +106,8 @@ Execute the command in the directory where the JAR is situated or use its explic
 Adjust the initially allocated memory (-Xms) and maximum memory to be used (-Xmx) according to your preferences.
 
 <p>Please note that MORTAR only supports x64 (on all three platforms) and AArch64 (on macOS and Linux) architectures in general. 
-For the latter, a special "fat JAR" named "MORTAR-fat-aarch64-1.2.0.0-beta.jar" is available from the distributions attached to the releases and must be used 
-(click <a href="https://github.com/FelixBaensch/MORTAR/releases/download/v1.2.0.0-beta/MORTAR-fat-aarch64-1.2.0.0-beta.jar">here</a> to 
+For the latter, a special "fat JAR" named "MORTAR-fat-aarch64-1.2.0.0-beta.1.jar" is available from the distributions attached to the releases and must be used 
+(click <a href="https://github.com/FelixBaensch/MORTAR/releases/download/v1.2.0.0-beta.1/MORTAR-fat-aarch64-1.2.0.0-beta.1.jar">here</a> to 
 automatically download the AArch64 JAR of the latest version).</p>
 Also note that using the Windows Subsystem for Linux (WSL) is not recommended, since a lot of additional configurations 
 have to be made there to run Java GUI applications.

build.gradle

@@ -7,7 +7,7 @@ plugins {
 }
 
 group 'de.unijena.cheminf'
-version '1.2.0.0-beta'
+version '1.2.0.0-beta.1'
 
 sourceCompatibility = 1.21
 

src/main/java/de/unijena/cheminf/mortar/model/util/BasicDefinitions.java

@@ -111,7 +111,7 @@ private BasicDefinitions() {
     /**
      * Version of application.
      */
-    public static final String MORTAR_VERSION = "1.2.0.0-beta";
+    public static final String MORTAR_VERSION = "1.2.0.0-beta.1";
     //</editor-fold>
     //
     //<editor-fold defaultstate="collapsed" desc="Model constants and magic numbers">