v5.2.0

Infer or autocorrect the format in the htsget command

The client now determines the file format as follows:

1. It first tries to detect the format from the file name.
2. If it can't, it uses the format the user specifies.
3. If no format is detected or specified, it defaults to "BAM" (This is the file-distribution service behaviour)

Note: If both detected and specified formats are available but differ, the detected format is used.

https://pypi.org/project/pyega3/5.2.0/

v5.1.0

Post download stats data to the service

https://pypi.org/project/pyega3/5.1.0/

v5.0.2

Retry the whole slice when the download interrupted

https://pypi.org/project/pyega3/5.0.2/

v5.0.1

Set fileStatus for file metadata JSON from new data API

https://pypi.org/project/pyega3/5.0.1/

v5.0.0

• Allow the client to query the new data api
• --format parameter now supports BCF and VCF too

https://pypi.org/project/pyega3/5.0.0/

v4.0.5

• Refactor client to store VERSION number in dedicated file
• Add --version parameter that allows users to check the client's version number
• Add version number to client description

v4.0.4

• Retry GET file metadata HTTP 500 errors
• Exit with failure code 1 when there is an exception in executing commands

https://pypi.org/project/pyega3/4.0.4/

v4.0.3

• Fix fresh install issues

https://pypi.org/project/pyega3/4.0.3/

v4.0.2

Fix the pyEGA3 version in the logs

https://pypi.org/project/pyega3/4.0.2/#description

4.0.1

• Retry GET requests with back off timeout for downloading slices
• Reuse valid file slices on retries

https://pypi.org/project/pyega3/4.0.1/#description