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@DSIMB

DSIMB

Dynamics of Structures and Interactions of Biological Macromolecules

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  1. SWORD2 SWORD2 Public

    SWift and Optimized Recognition of protein Domains

    Perl 23 2

  2. PoincareMSA PoincareMSA Public

    Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparative analysis of their amino acid sequences through multiple se…

    Jupyter Notebook 10 2

  3. MEDUSA MEDUSA Public

    A Deep Learning based protein flexibility prediction tool.

    Perl 8 2

  4. ICARUS ICARUS Public

    Flexible protein structural alignment based on Protein Units

    Perl 4 1

  5. PYTHIA PYTHIA Public

    Deep Learning Approach For Local Protein Conformation Prediction

    Perl 3

  6. pepit pepit Public

    The PepIT program proposes peptides that may interact with a given protein. PepIT is based on a non-sequential alignment algorithm to identify peptide binding sites that share geometrical and physi…

    R 1

Repositories

Showing 10 of 13 repositories
  • SWORD2 Public

    SWift and Optimized Recognition of protein Domains

    DSIMB/SWORD2’s past year of commit activity
    Perl 23 2 0 0 Updated Sep 19, 2024
  • VEP-Benchmark Public
    DSIMB/VEP-Benchmark’s past year of commit activity
    Python 0 0 0 0 Updated Sep 5, 2024
  • pepit Public

    The PepIT program proposes peptides that may interact with a given protein. PepIT is based on a non-sequential alignment algorithm to identify peptide binding sites that share geometrical and physicochemical properties with regions on the target protein.

    DSIMB/pepit’s past year of commit activity
    R 1 0 0 0 Updated Jun 21, 2024
  • ICARUS Public

    Flexible protein structural alignment based on Protein Units

    DSIMB/ICARUS’s past year of commit activity
    Perl 4 1 0 0 Updated Jun 12, 2024
  • CompareCBS Public

    Comparison of carbohydrate binding site (CBS) geometry using a graph-based method

    DSIMB/CompareCBS’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 28, 2024
  • PoincareMSA Public

    Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparative analysis of their amino acid sequences through multiple sequence alignment. While a direct analysis of the resulting data allows to identify conserved regions, it does not provide a general and broad view on …

    DSIMB/PoincareMSA’s past year of commit activity
    Jupyter Notebook 10 2 3 0 Updated Sep 22, 2023
  • PYTHIA Public

    Deep Learning Approach For Local Protein Conformation Prediction

    DSIMB/PYTHIA’s past year of commit activity
    Perl 3 0 0 1 Updated Jun 14, 2023
  • AMBROSIA Public
    DSIMB/AMBROSIA’s past year of commit activity
    Python 0 0 0 0 Updated Jan 20, 2023
  • MEDUSA Public

    A Deep Learning based protein flexibility prediction tool.

    DSIMB/MEDUSA’s past year of commit activity
    Perl 8 2 1 0 Updated Oct 18, 2022
  • test_fork Public

    This is a fork of my test repo

    DSIMB/test_fork’s past year of commit activity
    0 0 0 0 Updated Sep 2, 2022
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