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Add dims to cmn obj for individual generate
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CanYing0913 committed Jul 14, 2023
1 parent 2d41e2c commit bc3f380
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1 change: 1 addition & 0 deletions src/src_pipeline.py
Original file line number Diff line number Diff line change
Expand Up @@ -443,6 +443,7 @@ def ps2(txt: str):
(components, frames) = cnm.estimates.C.shape
ps2(f"frames: {frames}")
cnm.estimates.detrend_df_f(quantileMin=8, frames_window=frames)
setattr(cnm, 'dims', dims)
self.caiman_obj = cnm
# reconstruct denoised movie
if self.csave:
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