Skip to content

βeta2

Pre-release
Pre-release
Compare
Choose a tag to compare
@ankushkgupta2 ankushkgupta2 released this 17 Mar 03:59
· 889 commits to master since this release
v1.0.0-beta
b6cebde
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Added Functionality:

(1) Ability to easily specify a database for sample submission through the Nextflow wrapper (submission_database)

(2) Pre-existing email functionality, for notifying user during a Genbank submission with genbank_submission_type set to table2asn, is now configurable within the Nextflow wrapper

  • Functionality is toggled on/off with send_submission_email
  • Email recipient is specified as a new field within your submission config under 'general' as 'notif_email_recipient'

(3) Git submodule integration of internal CDC submission configs with the repository

  • Configs exist in a remote GitLab repository with permissions limited to CDC personnel with access to the Monkeypox group
  • Documentation outlining steps on how to initialize the submodule and pull these config files from the remote location to your local version of the repo is specified within docs/cdc_configs_access.md

(4) Fully Nextflow Tower compatible

  • Docker container is now hosted DockerHub and can automatically be pulled in (assuming you have the proper permissions)
  • Rewriting/refactoring of the Python scripts handling database submission via FTP
  • Enhancements of Nextflow wrapper structure/code to now scale across various environments

(5) Updates to README.md to include these latest changes (new/removed parameters, general restructuring etc.), as well as updates to PULL_REQUEST_TEMPLATE.md

Assets 2
Loading