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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 340 149

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 22 13

Repositories

Showing 10 of 386 repositories
  • npc_sessions Public

    Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.

    AllenInstitute/npc_sessions’s past year of commit activity
    Python 1 1 49 (3 issues need help) 0 Updated Sep 20, 2024
  • skeleton_plot Public

    tools for plotting swc and meshparty skeletons

    AllenInstitute/skeleton_plot’s past year of commit activity
    Jupyter Notebook 3 4 0 1 Updated Sep 19, 2024
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 22 6 287 10 Updated Sep 19, 2024
  • pigeon Public

    A STOMP client with message definitions via Pydantic

    AllenInstitute/pigeon’s past year of commit activity
    Python 0 BSD-3-Clause 2 1 0 Updated Sep 19, 2024
  • TEM_comms Public

    Pigeon messages for the next generation TEM imaging system

    AllenInstitute/TEM_comms’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Sep 19, 2024
  • pigeon-msgs-cookiecutter Public

    A template for Pigeon message definitions.

    AllenInstitute/pigeon-msgs-cookiecutter’s past year of commit activity
    Python 0 0 0 0 Updated Sep 19, 2024
  • TEM_setup Public

    Setup instructions and script for the TEM computers.

    AllenInstitute/TEM_setup’s past year of commit activity
    Shell 0 0 1 0 Updated Sep 19, 2024
  • deep-neurographs Public

    Deep-Neurographs is a Python module that utilizes machine learning to detect and correct false splits in a predicted neuron segmentation.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Sep 19, 2024
  • axonal_connectomics Public

    Repository for tools developed for axonal connectomics

    AllenInstitute/axonal_connectomics’s past year of commit activity
    Jupyter Notebook 2 0 3 0 Updated Sep 19, 2024
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 3 BSD-3-Clause 1 52 4 Updated Sep 18, 2024
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