From eb617cef88a1e9a104f64a8ec5d645ca43b0b569 Mon Sep 17 00:00:00 2001
From: Mootor
 <mmootor@ip-0A125257.rhxrlfvjyzbupc03cc22jkch3c.xx.internal.cloudapp.net>
Date: Fri, 22 Mar 2024 17:38:20 -0700
Subject: [PATCH] add plantUML file

---
 docs/call-sSV.puml | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)
 create mode 100644 docs/call-sSV.puml

diff --git a/docs/call-sSV.puml b/docs/call-sSV.puml
new file mode 100644
index 0000000..091f272
--- /dev/null
+++ b/docs/call-sSV.puml
@@ -0,0 +1,31 @@
+@startuml
+skinparam SwimlaneTitleFontStyle bold
+
+start
+
+:==Input
+---
+Input Matched Tumor/Normal BAMs;
+:==Input Validation
+---
+Validate the input BAMs and corresponding index files;
+
+split
+partition "DELLY" {
+    :==call sSV DELLY
+    ---
+    Call sSVs using DELLY;
+    :==Filter sSV
+    ---
+    Filter out germline SVs;
+    }
+
+split again
+partition "Manta" {
+    :==call sSV Manta
+    ---
+    Call SVs using Manta;
+    }
+end split
+stop
+@enduml
\ No newline at end of file