Swarm 2.1.13

Fix bug with progress bar when writing seeds.

Swarm 2.1.12: Remove debugging message

Remove a debugging message

Swarm 2.1.11: Fix bugs with SIMD alignment when d>1

Version 2.1.11 fixes two bugs (issue #96) related to the SIMD implementation of alignment that might result in incorrect alignments and scores. The bug only applies when d>1.

Swarm 2.1.10

Swarm version 2.1.10 fixes two bugs related to gap penalties of alignments. The first bug may lead to wrong alignments and similarity percentages reported in UCLUST (.uc) files. The second bug makes Swarm use a slightly higher gap extension penalty than specified. The default gap extension penalty used have actually been 4.5 instead of 4.

Swarm 2.1.9

Fix compilation errors with GCC version 6.

SWARM 2.1.8

Fix rare bug with extremely short non-dereplicated sequences.
Do not show alignment parameters for d=1.

SWARM 2.1.7

Fix error with seed output. Ignore CR in FASTA files. Improved help and error messsages. And more.

SWARM 2.1.6

Swarm 2.1.6 fixes problems with older compilers that do not have the x86intrin.h header file. It also fixes a bug in the output of seeds with the -w option when d>1.

SWARM 2.1.5

Swarm 2.1.5 fixes minor bugs.

SWARM 2.1.4

Swarm 2.1.4 fixes minor bugs in the algorithm used for d=1.