analysis of data on neutral single nucleotide polymorphisms
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Updated
Sep 18, 2024 - Jupyter Notebook
analysis of data on neutral single nucleotide polymorphisms
Call and score variants from WGS/WES of rare disease patients.
Data management of large-scale whole-genome sequence variant calls (Development version only)
A collection of software to work with genomic variants
In this repository I backup the pipelines I write for the project I am involved
This guide outlines a step-by-step process for managing your WordPress plugin to add/update in the WordPress repository using SVN (Subversion). SVN is a version control system that helps you track changes, collaborate with others, and maintain a history of your project.
🌳 Human ancestry inference from genomic data
a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow
Genome assembly and variant benchmarks for Chinese Quartet
Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning
An adaptable method for analyzing SNVs, INDELs, and CNVs from Whole Exome Sequencing (WES) data, emphasizing germline variants.
Generic human DNA variant annotation pipeline
WES Analysis scripts for "Immune determinants of response to neoadjuvant chemo-radiation in esophageal adenocarcinoma" publication
vue app with flask REST api to process genomic data
Convert output from Samtools pileup into a matrix.
Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).
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