QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
-
Updated
Jan 20, 2020 - R
QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
Rapid standardisation and quality control of GWAS or QTL summary statistics
Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Mixed models @lme4 + custom covariances + parameter constraints
A workflow based on QTLtools to run cis- and trans-QTL analyses.
R package for random-effect multiple QTL mapping in autopolyploids
QTLTableMiner++ tool for mining tables in scientific articles
A comprehensive QTL analysis tool by multivariate linear mixed model.
Linked Data Platform for Plant Breeding & Genomics
Pipeline to compute associations between genome-wide trans QTL scores and phenotype of interest
Code used for the manuscript 'Network reconstruction for trans acting genetic loci using multi-omics data and prior information' by Hawe et al., 2022 in Genome Medicine
fastQTL analysis of methylation and expression data
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
This is a fork from qqman package
Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
echoverse module: Locus plot creation for fine-mapping and colocalization studies.
Add a description, image, and links to the qtl topic page so that developers can more easily learn about it.
To associate your repository with the qtl topic, visit your repo's landing page and select "manage topics."