Nanopore based RNA-Seq pipeline for viral samples
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Updated
Apr 6, 2020
Nanopore based RNA-Seq pipeline for viral samples
Documentation for running microPIPE at Pawsey
Nanopore long read assembly data pipeline for phage genomes
This repo is for the scripts used in preparation of Flongle Actinomycetes paper
Run Oxford Nanopore MinION software in Docker containers. Mirror of https://gitlab.com/lapinskim/minion_docker
Wastewater Enterovirus Typing Tool
Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.
Nextflow pipeline incorporating the tracm/tracs alignment step alone.
Project to simulate simple Oxford Nanopore Technologies RNA signals
This page is contains all the software and commands I've used for my mtDNA analysis.
Nextflow pipeline for basecalling / demultiplexing ONT data, using Dorado
Documentation for the https://github.com/JannesSP/read5 repository
Single-cell/nuclei pipeline for data derived from Oxford Nanopore
Scripts for Basecalling on GridION Sequenicng machines from Oxford Nanopore
poreSTAT: a python framework for working with fast5 third generation sequencing data
Wrapper to read fast5 and pod5 files.
A pipeline for variant calling from P. falciparum short reads generated from Illumina and ONT libraries
Nextflow Pipeline for Strain Resolution from Long Reads
Synchronise Nanopore reads with a server.
Analysis of MinION sequence data from water and sediment samples for Avian Influenza Detection
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