Current code for my hippocampal morphometry workflow, based on the hippodeep_pytorch segmentation program and the SlicerSALT shape analysis software.
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Updated
Aug 13, 2024 - Python
Current code for my hippocampal morphometry workflow, based on the hippodeep_pytorch segmentation program and the SlicerSALT shape analysis software.
DL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation
The old, outdated code for my hippocampal morphometry pipeline.
Fluvial Corridor Toolbox QGis Plugin
The aVP-Toolbox project proposes an innovative dedicated methodology to allow morphometric MRI analysis of the whole anterior visual pathway of the human brain.
Symmetrization of 2D pattern using nonrigid landmark registration
Stereological macros for ImageJ
Morphometric analysis of cells in microscopy images.
Morphometric analysis of neuromuscular junction microscopy images, and protein distribution and localisation analysis of immunohistochemically-labelled microscopy images.
ITK filters that quantify bone morphometry
A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects and groups.
Source code and workflow protocols for SOCR 3D Cell Morphometry Project
Fluvial Corridor Toolbox Applications
Brain Morphometry Estimation: From Hours to Seconds Using Deep Learning
implementation of the Bayesian Force Inference technique based on the work of Ishihara and Sugimura
for measuring curvature along the boundary of an image object
UNDER CONSTRUCTION: Mouse brain morphometry analysis pipeline for MRI imaging data
Cell counter integrated with Grid for manual morphometry
Tools for MRI mouse brain morphometry
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