Automated mitochondrial genome assembly using SRA public data
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Updated
Dec 29, 2023 - Perl
Automated mitochondrial genome assembly using SRA public data
This repository contains all the code used for the publication "Morphological principles of neuronal mitochondria".
Practice lesson for NGS Data Analysis
Repository for proteomic data analysis used in the publication "Extreme Acetylation of the Cardiac Mitochondrial Proteome Does Not Promote Heart Failure."
Undergraduate Research Thesis Project for MHI 4980E at Western University
Mechanistic QSAR models for key human health endpoints
Contamination detection workflow based on mtDNA
Taxonomic classification and read binning of mitochondrial DNA
Complements mitoSim - the simulator of cell mitochondria as a spacelss graph.
Repository for proteomic data analysis used in the publication "Disruption of acetyl-lysine turnover in muscle mitochondria promotes insulin resistance and redox stress without overt respiratory dysfunction."
Fall 2022 Bioengineering 298 Final Project: using protein networks to understand drug and disease mechanisms
Spatiotemporal bioenergetics in the cardiac cell
A small pipeline for assembling mitochondrial genomes and filtering reads prior to assembly.
A snakemake pipeline wrapping MitoZ and getOrganelle for de novo mitogenome assembly using short reads and subsequent QC.
A simple, step-by-step guide to applying self-supervised learning techniques to a mitochondria segmentation task using PyTorch.
This Python program translates R123 dye fluorescence signals into mitochondrial membrane potential (in mV). The tool provides a streamlined and accurate approach for researchers to quantify membrane potential based on dye intensity, aiding in mitochondrial function studies.
Paper - Endocrine disruption from plastic pollution and warming interact to increase the energetic cost of growth in a fish
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