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14 public repositories
matching this topic...
This project shows a method with a topic modeling approach: non-negative matrix factorization (NMF), used in EHR for subphenotyping and identifying the relationship between phenotypes and genetic variants
Updated
Jun 7, 2019
Jupyter Notebook
How to: find acute exacerbation of COPD events in UK primary care electronic healthcare records
Updated
Jul 20, 2023
Stata
How to: create drug codelists for recorded prescriptions
Updated
Oct 20, 2023
Stata
Lecture slides on Electronic Health Record Data Quality
Updated
Jul 30, 2024
Makefile
How to: create SNOMED CT codelists
Updated
May 29, 2024
Stata
Introduction to PERMIT project resources
Cast different EHR (electronic health record) layers to a shared latent space to identify patient subtypes
Updated
Sep 25, 2023
Jupyter Notebook
A software toolkit for the interconversion of standard data models for phenotypic data
using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
Updated
Jan 13, 2023
Python
The OMOP Common Data Model(v6) implemented in Django (v3)
Updated
Jan 26, 2021
Python
[ML4H 2022] This is the code for our paper `Counterfactual and Factual Reasoning over Hypergraphs for Interpretable Clinical Predictions on EHR'.
Updated
Feb 6, 2024
Python
Code accompanying our ACM CHIL paper: "TASTE: Temporal and Static Tensor Factorization for Phenotyping Electronic Health Records"
Updated
Apr 22, 2020
MATLAB
RETIRED - Clinical phenotyping and ETL system
Repository for the GA4GH phenopacket schema
Updated
Sep 19, 2024
Java
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