Gauntlet.toml

[repositories."ENCODE-DCC/chip-seq-pipeline2"]
identifier = "ENCODE-DCC/chip-seq-pipeline2"
commit_hash = "26eeda81a0540dc793fc69b0c390d232ca7ca50a"

[repositories."PacificBiosciences/HiFi-human-WGS-WDL"]
identifier = "PacificBiosciences/HiFi-human-WGS-WDL"
commit_hash = "9a1a2846443e4b621f1dca0259fd3fa21885156a"

[repositories."aws-samples/amazon-omics-tutorials"]
identifier = "aws-samples/amazon-omics-tutorials"
commit_hash = "136ecf7e5aaee18619e14ee65a97acc6d6704bef"

[repositories."biowdl/tasks"]
identifier = "biowdl/tasks"
commit_hash = "2bf875300d90a3c9c8d670b3d99026452d5dbae2"

[repositories."broadinstitute/gatk-tool-wdls"]
identifier = "broadinstitute/gatk-tool-wdls"
commit_hash = "4536dd2c6719b86f4c50348f0ce354818260cadb"

[repositories."broadinstitute/palantir-workflows"]
identifier = "broadinstitute/palantir-workflows"
commit_hash = "ae5b3026ea0102ab4164d30d552cabfc16076b44"

[repositories."broadinstitute/warp"]
identifier = "broadinstitute/warp"
commit_hash = "9b5e498e19b89ef72a2c27bb68884c54de768d76"

[repositories."chanzuckerberg/czid-workflows"]
identifier = "chanzuckerberg/czid-workflows"
commit_hash = "c49eed253a8eae532a5c60e34cbdd2551177a099"

[repositories."getwilds/ww-fastq-to-cram"]
identifier = "getwilds/ww-fastq-to-cram"
commit_hash = "2d1e1989a57402642c06d15f4b623ac66fd9ed7d"

[repositories."getwilds/ww-star-deseq2"]
identifier = "getwilds/ww-star-deseq2"
commit_hash = "6d81ede0ad963115697c3f707f073177ddde7013"

[repositories."getwilds/ww-vc-trio"]
identifier = "getwilds/ww-vc-trio"
commit_hash = "c2c13e85efda8ac7aca7f8765fbaa7c2cacb08b2"

[repositories."stjudecloud/workflows"]
identifier = "stjudecloud/workflows"
commit_hash = "129060215443bbd1b67c4d3d149d48acdab90ef2"
filters = ["/template/task-templates.wdl"]

[repositories."theiagen/public_health_bioinformatics"]
identifier = "theiagen/public_health_bioinformatics"
commit_hash = "109e5878fd71d4102dff91110d18d6d6f1d2c002"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/gatk-best-practices/workflows/somatic-snps-and-indels/mutec2.wdl"
message = "mutec2.wdl:112:41: error: expected struct member name, but found string"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/gatk-best-practices/workflows/somatic-snps-and-indels/mutec2.wdl/#L112"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/gatk-best-practices/workflows/somatic-snps-and-indels/mutec2.wdl"
message = "mutec2.wdl:113:41: error: expected struct member name, but found string"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/gatk-best-practices/workflows/somatic-snps-and-indels/mutec2.wdl/#L113"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/gatk-best-practices/workflows/somatic-snps-and-indels/mutec2.wdl"
message = "mutec2.wdl:114:41: error: expected struct member name, but found string"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/gatk-best-practices/workflows/somatic-snps-and-indels/mutec2.wdl/#L114"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/gatk-best-practices/workflows/somatic-snps-and-indels/mutec2.wdl"
message = "mutec2.wdl:115:41: error: expected struct member name, but found string"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/gatk-best-practices/workflows/somatic-snps-and-indels/mutec2.wdl/#L115"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:110:29: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L110"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:111:23: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L111"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:142:29: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L142"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:143:23: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L143"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:174:29: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L174"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:175:23: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L175"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:210:29: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L210"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:211:23: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L211"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:244:29: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L244"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:245:23: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L245"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:284:29: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L284"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:285:23: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L285"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:323:29: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L323"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:324:23: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L324"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:325:28: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L325"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl"
message = "alphafold-600.wdl:326:48: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/alphafold/alphafold-600.wdl/#L326"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/esmfold/esmfold.wdl"
message = "esmfold.wdl:58:29: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/esmfold/esmfold.wdl/#L58"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/esmfold/esmfold.wdl"
message = "esmfold.wdl:59:23: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/esmfold/esmfold.wdl/#L59"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/esmfold/esmfold.wdl"
message = "esmfold.wdl:83:29: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/esmfold/esmfold.wdl/#L83"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/esmfold/esmfold.wdl"
message = "esmfold.wdl:84:23: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/esmfold/esmfold.wdl/#L84"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/esmfold/esmfold.wdl"
message = "esmfold.wdl:85:28: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/esmfold/esmfold.wdl/#L85"

[[diagnostics]]
document = "aws-samples/amazon-omics-tutorials:/example-workflows/protein-folding/workflows/esmfold/esmfold.wdl"
message = "esmfold.wdl:86:48: error: expected runtime key, but found `,`"
permalink = "https://github.com/aws-samples/amazon-omics-tutorials/blob/136ecf7e5aaee18619e14ee65a97acc6d6704bef/example-workflows/protein-folding/workflows/esmfold/esmfold.wdl/#L86"

[[diagnostics]]
document = "biowdl/tasks:/bcftools.wdl"
message = 'bcftools.wdl:114:75: error: unknown escape sequence `\_`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/bcftools.wdl/#L114"

[[diagnostics]]
document = "biowdl/tasks:/bedtools.wdl"
message = 'bedtools.wdl:27:48: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/bedtools.wdl/#L27"

[[diagnostics]]
document = "biowdl/tasks:/bowtie.wdl"
message = 'bowtie.wdl:63:32: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/bowtie.wdl/#L63"

[[diagnostics]]
document = "biowdl/tasks:/bowtie.wdl"
message = 'bowtie.wdl:63:39: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/bowtie.wdl/#L63"

[[diagnostics]]
document = "biowdl/tasks:/bowtie.wdl"
message = 'bowtie.wdl:63:46: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/bowtie.wdl/#L63"

[[diagnostics]]
document = "biowdl/tasks:/bowtie.wdl"
message = 'bowtie.wdl:75:48: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/bowtie.wdl/#L75"

[[diagnostics]]
document = "biowdl/tasks:/centrifuge.wdl"
message = 'centrifuge.wdl:122:57: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/centrifuge.wdl/#L122"

[[diagnostics]]
document = "biowdl/tasks:/centrifuge.wdl"
message = 'centrifuge.wdl:122:64: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/centrifuge.wdl/#L122"

[[diagnostics]]
document = "biowdl/tasks:/centrifuge.wdl"
message = 'centrifuge.wdl:199:57: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/centrifuge.wdl/#L199"

[[diagnostics]]
document = "biowdl/tasks:/centrifuge.wdl"
message = 'centrifuge.wdl:199:64: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/centrifuge.wdl/#L199"

[[diagnostics]]
document = "biowdl/tasks:/centrifuge.wdl"
message = 'centrifuge.wdl:256:57: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/centrifuge.wdl/#L256"

[[diagnostics]]
document = "biowdl/tasks:/centrifuge.wdl"
message = 'centrifuge.wdl:256:64: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/centrifuge.wdl/#L256"

[[diagnostics]]
document = "biowdl/tasks:/common.wdl"
message = 'common.wdl:275:45: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/common.wdl/#L275"

[[diagnostics]]
document = "biowdl/tasks:/fastqc.wdl"
message = 'fastqc.wdl:59:42: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/fastqc.wdl/#L59"

[[diagnostics]]
document = "biowdl/tasks:/fastqc.wdl"
message = 'fastqc.wdl:63:54: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/fastqc.wdl/#L63"

[[diagnostics]]
document = "biowdl/tasks:/fastqc.wdl"
message = 'fastqc.wdl:63:58: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/fastqc.wdl/#L63"

[[diagnostics]]
document = "biowdl/tasks:/gatk.wdl"
message = 'gatk.wdl:127:57: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/gatk.wdl/#L127"

[[diagnostics]]
document = "biowdl/tasks:/gatk.wdl"
message = 'gatk.wdl:1597:41: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/gatk.wdl/#L1597"

[[diagnostics]]
document = "biowdl/tasks:/hisat2.wdl"
message = 'hisat2.wdl:60:34: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/hisat2.wdl/#L60"

[[diagnostics]]
document = "biowdl/tasks:/hisat2.wdl"
message = 'hisat2.wdl:60:41: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/hisat2.wdl/#L60"

[[diagnostics]]
document = "biowdl/tasks:/multiqc.wdl"
message = 'multiqc.wdl:133:45: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/multiqc.wdl/#L133"

[[diagnostics]]
document = "biowdl/tasks:/picard.wdl"
message = 'picard.wdl:1021:48: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/picard.wdl/#L1021"

[[diagnostics]]
document = "biowdl/tasks:/picard.wdl"
message = 'picard.wdl:1191:48: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/picard.wdl/#L1191"

[[diagnostics]]
document = "biowdl/tasks:/picard.wdl"
message = 'picard.wdl:643:51: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/picard.wdl/#L643"

[[diagnostics]]
document = "biowdl/tasks:/picard.wdl"
message = 'picard.wdl:785:51: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/picard.wdl/#L785"

[[diagnostics]]
document = "biowdl/tasks:/picard.wdl"
message = 'picard.wdl:900:46: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/picard.wdl/#L900"

[[diagnostics]]
document = "biowdl/tasks:/picard.wdl"
message = 'picard.wdl:901:46: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/picard.wdl/#L901"

[[diagnostics]]
document = "biowdl/tasks:/picard.wdl"
message = 'picard.wdl:902:49: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/picard.wdl/#L902"

[[diagnostics]]
document = "biowdl/tasks:/sambamba.wdl"
message = 'sambamba.wdl:145:49: error: unknown escape sequence `\.`'
permalink = "https://github.com/biowdl/tasks/blob/2bf875300d90a3c9c8d670b3d99026452d5dbae2/sambamba.wdl/#L145"

[[diagnostics]]
document = "biowdl/tasks:/sambamba.wdl"
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[[diagnostics]]
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[[diagnostics]]
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[[diagnostics]]
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[[diagnostics]]
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[[diagnostics]]
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[[diagnostics]]
document = "broadinstitute/warp:/tasks/broad/UltimaGenomicsWholeGenomeGermlineTasks.wdl"
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[[diagnostics]]
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[[diagnostics]]
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[[diagnostics]]
document = "broadinstitute/warp:/verification/VerifyUltimaGenomicsWholeGenomeCramOnly.wdl"
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[[diagnostics]]
document = "broadinstitute/warp:/verification/VerifyUltimaGenomicsWholeGenomeGermline.wdl"
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[[diagnostics]]
document = "chanzuckerberg/czid-workflows:/workflows/index-generation/index-generation.wdl"
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